Jatropha Genome Database

JcCA0311301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311301.20 + phase: 2 /pseudo/partial
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026886001 assembled CDS                                       170   3e-43
GSVIVT01017327001 assembled CDS                                       168   1e-42
GSVIVT01026883001 assembled CDS                                       164   2e-41
GSVIVT01025225001 assembled CDS                                       149   7e-37
GSVIVT01026887001 assembled CDS                                       146   5e-36
GSVIVT01026884001 assembled CDS                                       137   2e-33
GSVIVT01026885001 assembled CDS                                       137   2e-33
GSVIVT01017329001 assembled CDS                                       136   5e-33
GSVIVT01025223001 assembled CDS                                        82   1e-16
GSVIVT01025221001 assembled CDS                                        65   2e-11

>GSVIVT01026886001 assembled CDS
          Length = 188

 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 96/117 (82%)

Query: 37  GKHYTIYKCSPRVTKNTPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFNKM 96
           GK YT YKCSP V+ +T A LT+N F+K  +GGAPSECD +YH D+ PVVALSTGW+NK 
Sbjct: 57  GKLYTTYKCSPTVSSHTKAYLTLNGFQKDEDGGAPSECDNQYHSDDTPVVALSTGWYNKG 116

Query: 97  KRCGHHIKIHANGKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
            RC ++I I ANG++V AMV+DECDST+GCDS+H YQPP  NNI+DAS+AVWKALGV
Sbjct: 117 SRCLNNITISANGRSVVAMVVDECDSTMGCDSDHDYQPPCTNNIIDASRAVWKALGV 173


>GSVIVT01017327001 assembled CDS
          Length = 153

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%)

Query: 40  YTIYKCSPRVTKNTPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFNKMKRC 99
           YT YKCSP V+ +T A LT+N F+K  +GGAPSECD +YH D+ PVVALSTGW+NK  RC
Sbjct: 25  YTTYKCSPTVSSHTKAYLTLNGFEKDEDGGAPSECDNQYHSDDTPVVALSTGWYNKGSRC 84

Query: 100 GHHIKIHANGKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
            ++I I ANG++V AMV+DECDST+GCDS+H YQPP  NNIVDAS+AVW+ALGV
Sbjct: 85  LNNITITANGRSVVAMVVDECDSTMGCDSDHDYQPPCANNIVDASRAVWEALGV 138


>GSVIVT01026883001 assembled CDS
          Length = 192

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 95/121 (78%), Gaps = 4/121 (3%)

Query: 37  GKHYTIYKCSPRVTKNTPATLTINSFKKGGNG----GAPSECDGKYHDDNMPVVALSTGW 92
           GK YT YKCSP+V+ +T   LT+N F K  +G    GAPSECD +YH D+ PVVALSTGW
Sbjct: 57  GKFYTTYKCSPQVSSHTKGFLTLNGFDKDQDGDEDGGAPSECDNQYHSDDTPVVALSTGW 116

Query: 93  FNKMKRCGHHIKIHANGKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALG 152
           +NK  RC ++I I ANG++V AMV+DECDST+GCDS+H YQPP  NNIVDAS+AVWKALG
Sbjct: 117 YNKGSRCLNNITITANGRSVVAMVVDECDSTMGCDSDHDYQPPCANNIVDASRAVWKALG 176

Query: 153 V 153
           V
Sbjct: 177 V 177


>GSVIVT01025225001 assembled CDS
          Length = 382

 Score =  149 bits (375), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 89/118 (75%), Gaps = 1/118 (0%)

Query: 37  GKHYTIYKCSPRVTKNTPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFNKM 96
           G++Y  Y CSP++T +T A LT N F +GG+GG PSECDGKYH+++ P+VALSTGW+N  
Sbjct: 81  GQYYPTYTCSPQITSSTSAILTNNDFSEGGDGGGPSECDGKYHNNSDPIVALSTGWYNGG 140

Query: 97  KRCGHHIKIHA-NGKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
            RCG  IKI A NG++V A V+DECDS  GCD EHS QPP  NNIV+ S AVW ALG+
Sbjct: 141 FRCGKMIKITADNGRSVLAKVVDECDSLRGCDEEHSDQPPCKNNIVNGSDAVWSALGL 198


>GSVIVT01026887001 assembled CDS
          Length = 171

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 81/96 (84%)

Query: 58  TINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFNKMKRCGHHIKIHANGKTVKAMVL 117
           T  +F+KGG+GGAPSECD KYH D+ PVVALSTGW+NK  RC ++I I A G+++ AMV+
Sbjct: 61  TTYNFEKGGDGGAPSECDRKYHSDDTPVVALSTGWYNKGSRCLNNITISARGRSMVAMVV 120

Query: 118 DECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
           DECDST+GCD +H YQPP PNNIVDASKAVW+ALGV
Sbjct: 121 DECDSTMGCDEDHDYQPPCPNNIVDASKAVWEALGV 156


>GSVIVT01026884001 assembled CDS
          Length = 168

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 75/89 (84%)

Query: 67  NGGAPSECDGKYHDDNMPVVALSTGWFNKMKRCGHHIKIHANGKTVKAMVLDECDSTIGC 126
           +GGAPSECD  YH D+ PVVALSTGW+NK  RC ++I I ANG++V AMV+DECDST+GC
Sbjct: 67  DGGAPSECDNHYHSDDTPVVALSTGWYNKGSRCLNNITITANGRSVVAMVVDECDSTMGC 126

Query: 127 DSEHSYQPPYPNNIVDASKAVWKALGVKE 155
           DS+H YQPP  NNIVDAS+AVWKALGV +
Sbjct: 127 DSDHDYQPPCANNIVDASRAVWKALGVPQ 155


>GSVIVT01026885001 assembled CDS
          Length = 168

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 75/89 (84%)

Query: 67  NGGAPSECDGKYHDDNMPVVALSTGWFNKMKRCGHHIKIHANGKTVKAMVLDECDSTIGC 126
           +GGAPSECD  YH D+ PVVALSTGW+NK  RC ++I I ANG++V AMV+DECDST+GC
Sbjct: 67  DGGAPSECDNHYHSDDTPVVALSTGWYNKGSRCLNNITITANGRSVVAMVVDECDSTMGC 126

Query: 127 DSEHSYQPPYPNNIVDASKAVWKALGVKE 155
           DS+H YQPP  NNIVDAS+AVWKALGV +
Sbjct: 127 DSDHDYQPPCANNIVDASRAVWKALGVPQ 155


>GSVIVT01017329001 assembled CDS
          Length = 168

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 75/89 (84%)

Query: 67  NGGAPSECDGKYHDDNMPVVALSTGWFNKMKRCGHHIKIHANGKTVKAMVLDECDSTIGC 126
           +GGAPSECD  YH D+ PV+ALSTGW+NK  RC ++I I ANG++V AMV+DECDST+GC
Sbjct: 67  DGGAPSECDNHYHSDDTPVLALSTGWYNKGSRCLNNITITANGRSVVAMVVDECDSTMGC 126

Query: 127 DSEHSYQPPYPNNIVDASKAVWKALGVKE 155
           DS+H YQPP  NNIVDAS+AVWKALGV +
Sbjct: 127 DSDHDYQPPCANNIVDASRAVWKALGVPQ 155


>GSVIVT01025223001 assembled CDS
          Length = 177

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 47/64 (73%)

Query: 35  RGGKHYTIYKCSPRVTKNTPATLTINSFKKGGNGGAPSECDGKYHDDNMPVVALSTGWFN 94
           +GGK    Y CSP VT +TPA LT N+F+KGG+GG PS CD KYHD++  +VALSTGW+N
Sbjct: 87  KGGKPKNTYTCSPPVTSSTPAVLTNNNFEKGGDGGGPSACDNKYHDNSERIVALSTGWYN 146

Query: 95  KMKR 98
              R
Sbjct: 147 GGSR 150


>GSVIVT01025221001 assembled CDS
          Length = 60

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 33/45 (73%)

Query: 109 GKTVKAMVLDECDSTIGCDSEHSYQPPYPNNIVDASKAVWKALGV 153
           G  V A V+DECDS  GCD EH+YQPP  NNIVD S AVW ALG+
Sbjct: 2   GGAVVAKVVDECDSMRGCDQEHAYQPPCKNNIVDGSDAVWSALGL 46