Jatropha Genome Database

JcCA0311291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311291.20 - phase: 0 
         (344 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013760001 assembled CDS                                       400   e-112

>GSVIVT01013760001 assembled CDS
          Length = 323

 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/294 (67%), Positives = 231/294 (78%), Gaps = 13/294 (4%)

Query: 53  LQSQISKLAKDNDGATSVGKEEVLPS-ALRIDLERQLQNWRENPSWVDQSPEIKVSVPKG 111
           L+S + +    N+G       E  PS AL ++LE+QLQ+W+ENP W +Q PEIKVSVPKG
Sbjct: 36  LKSHLKRSKNGNEGTNLKASVEKGPSTALGLNLEKQLQHWKENPVWTEQPPEIKVSVPKG 95

Query: 112 SLCNLNVKCNVGLPPDAVYNIVIDPDNRRVFKNIKEVISRKVLLDEGHRQVVEVEQAAIW 171
           SLC L+V+ +VGLPPDAVYNIVIDPDN+RVFKNIKEVISR+VLLDEG RQVVEVEQAA+W
Sbjct: 96  SLCKLSVEVDVGLPPDAVYNIVIDPDNKRVFKNIKEVISRRVLLDEGLRQVVEVEQAALW 155

Query: 172 KFLWWSGTISVHVLVDQNRKDLTMKFKQVKTGFMEKFEGCWRVEPVFVDEDICYPFKPKT 231
           +FLWWSGTISVHV+VDQNR+D +MKF QVKTGFM++FEGCWRV+PVFVDE  C+PFKPKT
Sbjct: 156 RFLWWSGTISVHVIVDQNREDHSMKFTQVKTGFMKRFEGCWRVKPVFVDEKSCFPFKPKT 215

Query: 232 WAEYHSCTRGKGRIGSKVSLEQLIQPTIVPPPPISWYLRGITSRTTEMIVYDLLAEAARI 291
           W EY+SCT GKGRIGSKVSLEQLIQP IVPPPPISWYLRGITSRTTEM++ DLLAEAARI
Sbjct: 216 WDEYYSCTGGKGRIGSKVSLEQLIQPAIVPPPPISWYLRGITSRTTEMLINDLLAEAARI 275

Query: 292 RGDLNTVR-----SEELETSHNSNDECRSGAKSSDIKERWAMHRSAKKHLRRRL 340
           RG     +     SE+    H  ++ C       DIKERWA+ R   K   ++ 
Sbjct: 276 RGISEPKKSVGEPSEQTSYEHQVDEVC-------DIKERWALRRRNGKQYHKKF 322