Jatropha Genome Database

JcCA0311291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311291.10 + phase: 0 /partial
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013761001 assembled CDS                                       270   2e-73
GSVIVT01007735001 assembled CDS                                       242   7e-65

>GSVIVT01013761001 assembled CDS
          Length = 419

 Score =  270 bits (691), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 1   NNRVIDMLVGDIYGGTDYSKIGLSSTTIASSFGKAISDNKEIDDYKPEDVARSLLRMISN 60
           NNRVIDMLVGDIYGG DYSK GL+STTIASSFGKAIS+NKE++DY+PEDVARSLLRMISN
Sbjct: 244 NNRVIDMLVGDIYGGMDYSKFGLASTTIASSFGKAISENKELEDYRPEDVARSLLRMISN 303

Query: 61  NIGQISYLNALRFGLKRIFFGGFFIQGHPYTMDTISVAVHFWSKGEAKAMFLRHEGFLGV 120
           NIGQISYLNALRFGLKRIFFGGFFI+GH YTMDTISVAV+FWSKGEAKAMFLRHEGFLG 
Sbjct: 304 NIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISVAVNFWSKGEAKAMFLRHEGFLGA 363

Query: 121 LGAFMSYAKHSLDDSVVNQSMQSL-VNGSYASDTNYNPQNGDWSDNESIPCSLYT 174
           LGAFMSY K++ D  +V+Q ++ +  + SY+ D  ++   GD +D+ESI CS+YT
Sbjct: 364 LGAFMSYEKNNYDGLMVHQLVEQVSTSASYSGDKIHSSLAGDLNDSESIGCSVYT 418


>GSVIVT01007735001 assembled CDS
          Length = 988

 Score =  242 bits (617), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 119/175 (68%), Positives = 140/175 (80%), Gaps = 1/175 (0%)

Query: 1   NNRVIDMLVGDIYGGTDYSKIGLSSTTIASSFGKAISDNKEIDDYKPEDVARSLLRMISN 60
           +NR IDMLVGDIYGG DYSKIGLS++TIASSFGK IS+NKE++DY+PED++ SLLRMIS 
Sbjct: 268 DNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISENKELEDYRPEDISLSLLRMISY 327

Query: 61  NIGQISYLNALRFGLKRIFFGGFFIQGHPYTMDTISVAVHFWSKGEAKAMFLRHEGFLGV 120
           NIGQISYLNALRFGLKRIFFGGFFI+GH YTMDTIS AV FWS G+A+AMFLRHEGFLG 
Sbjct: 328 NIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSNGDAQAMFLRHEGFLGA 387

Query: 121 LGAFMSYAKHSLDDSVVNQSMQSLVNGS-YASDTNYNPQNGDWSDNESIPCSLYT 174
           LGAFMSY KH LDD +V+Q ++    G+ Y     + P  GD ++      S +T
Sbjct: 388 LGAFMSYEKHGLDDLMVHQLVERFPMGAPYIGGRIHGPPLGDLNEKAIFHASKFT 442