Jatropha Genome Database

JcCA0311281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311281.10 - phase: 0 /partial
         (702 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013389001 assembled CDS                                       862   0.0  
GSVIVT01017108001 assembled CDS                                       246   2e-65
GSVIVT01017082001 assembled CDS                                       148   9e-36
GSVIVT01011125001 assembled CDS                                       102   9e-22

>GSVIVT01013389001 assembled CDS
          Length = 1218

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/699 (62%), Positives = 511/699 (73%), Gaps = 86/699 (12%)

Query: 1   MAVLASRKHYCTNSHVNGKENLDEEWYAFKVKRPKLLSTSRNAVKVRGHPSLQRGGCHEV 60
           MAVLASRKHYCTN  +N K N+DEE       +       +N  KV+GHPSLQ+GGCHE 
Sbjct: 164 MAVLASRKHYCTNRKINAKANIDEECKLLVRDQDFGCPEFKNMHKVKGHPSLQKGGCHEA 223

Query: 61  HDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAILILDE 120
           HDIEDLVK+G+VVKGC+YYAAR MAD+AQLVFCPYSY+INPVIRGAM+++I GAILILDE
Sbjct: 224 HDIEDLVKVGQVVKGCAYYAARDMADNAQLVFCPYSYIINPVIRGAMELDIEGAILILDE 283

Query: 121 AH------------------NIEDIARDAGSVDVDEDVLIKLQMELQQLCLLDASIYEPL 162
           AH                  NIED+ARDAGSVDV+EDVL KLQ EL QLC  DA IY+PL
Sbjct: 284 AHSVFVLYMTSPIMSETITFNIEDMARDAGSVDVEEDVLHKLQTELGQLCPADAMIYQPL 343

Query: 163 HDMAQDLVSWIKRRKSTLQKREFQNYFSCWTGDKALKELQEANISQQCFPILLDCATKAI 222
           ++M QD++SWI R+K+TL+KREFQ+YFSCWTGDKAL+ELQEANISQQ FPIL +CA KAI
Sbjct: 344 YEMTQDIISWIDRKKNTLEKREFQHYFSCWTGDKALRELQEANISQQSFPILQECARKAI 403

Query: 223 KAATDTELDTDHLSGMSVIVLEGLFSSLTYFFSRNGCHISDYQLALRRYVKRDKKNP--- 279
           KAA D E    HLSGMSVI LEGL+S+L+YFFS NG H  DYQLAL+RYVK+D  +    
Sbjct: 404 KAAIDIESRVAHLSGMSVITLEGLYSALSYFFSENGLHTVDYQLALQRYVKKDAGHHLSV 463

Query: 280 ------------VGDWTCTLSLWCLNPAVVFSDIAKISLSVILTSGTLSPMNSFCSELGV 327
                       + +WTCT SLWCLNPAVVF  IA +SLSVILTSGTLSPM+SF SELGV
Sbjct: 464 RLHLIKLMLVEFIQNWTCTFSLWCLNPAVVFRGIADLSLSVILTSGTLSPMHSFSSELGV 523

Query: 328 HFGTCLEAPHVIDTESQVWAAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVP 387
            FGTCLEAPHVID ESQ+WAA+ ST P NYPLNASYKTAD YAFQDALGK+LEEI  IVP
Sbjct: 524 QFGTCLEAPHVIDIESQLWAAIFSTSPGNYPLNASYKTADAYAFQDALGKSLEEIFKIVP 583

Query: 388 AGSLVFFPSYKLMEKLCSRWRETGQWARLNARKTLFVEPRGGSQEEDFDSVLKGYYDSIH 447
                                  GQW++LN +K LF+EPRGGSQ +DF+ +LK YY+S  
Sbjct: 584 -----------------------GQWSQLNEQKFLFIEPRGGSQ-DDFEPILKAYYES-- 617

Query: 448 QRSPQAVGRKRRTKKADLSHLKAMKSTETSEKDGAAFLAVCRGKVSEGMDFSDDNARVVI 507
                                    S + S+K GAAFLAV RGKVSEG+DFSD+NAR VI
Sbjct: 618 -------------------------SQDNSKKKGAAFLAVFRGKVSEGIDFSDENARAVI 652

Query: 508 VVGIPFPNIHDIQVGLKKNYNDAYKASKNLLSGNEWYCQQAFRALNQAIGRCIRHRFDYG 567
           +VGIPFPN+HDIQV  KK YND YK+SK+LLSGNEWYC QAFRALNQA GRCIRHRFDYG
Sbjct: 653 IVGIPFPNVHDIQVAQKKKYNDMYKSSKDLLSGNEWYCHQAFRALNQAAGRCIRHRFDYG 712

Query: 568 AIVLL-DERYKKEQNKIYISKWLRKSIRQYDSYGMSIEGLKSFFRDAKENIGKKMVDLLP 626
            I+LL DER+++++N  YISKWLRKSI+QY+S+ MS+E LKSFF DAKE +G K V++L 
Sbjct: 713 GIILLADERFREDRNTAYISKWLRKSIKQYESFDMSLERLKSFFIDAKEQVGDKAVNVLQ 772

Query: 627 NSDTNEGKNLCPRDQIKRCTGNKNQKLNKPDLCEGKLVS 665
           +++TN  + +   DQI   T  KNQKL KPD    K+VS
Sbjct: 773 SAETNV-QEILSMDQIIGSTRKKNQKLKKPDHGVQKVVS 810


>GSVIVT01017108001 assembled CDS
          Length = 777

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 189/363 (52%), Gaps = 47/363 (12%)

Query: 266 LALRRYVKRDKKNP-VGDWTCTLSLWCLNPAVVFSDIAKISLS-VILTSGTLSPMNSFCS 323
           + LR   K+ K NP +G  + TLS WC NP +   + A + +S +ILTSGTLSP+ SF  
Sbjct: 431 IRLRSAHKKTKANPNIGKASRTLSWWCFNPGIAMQEFAVLGVSSIILTSGTLSPLESFAQ 490

Query: 324 ELGVHFGTCLEAPHVIDTESQVWAAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEIC 383
           EL + F   LE PHVI + +Q+WA V+  GP     N+SY+T D   ++  LG  +    
Sbjct: 491 ELKLEFPVRLENPHVISS-NQIWAGVVPAGPSGCSFNSSYRTRDSLEYKQELGNAIVNFA 549

Query: 384 MIVPAGSLVFFPSYKLMEKLCSRWRETGQ---------WARLNARKTLFVEPRGGSQEED 434
            IVP G LVFFPSY ++E+    W+             W R+   K   +EPR   Q   
Sbjct: 550 RIVPDGLLVFFPSYYILEQCVGCWKNKSHANSTNSSTIWERICKHKQPVIEPR---QSSL 606

Query: 435 FDSVLKGYYDSIHQRSPQAVGRKRRTKKADLSHLKAMKSTETSEKDGAAFLAVCRGKVSE 494
           F S ++ Y                            M   + S   GA F AVCRGKVSE
Sbjct: 607 FPSSIEDY----------------------------MNKLKDSSMSGAVFFAVCRGKVSE 638

Query: 495 GMDFSDDNARVVIVVGIPFPNIHDIQVGLKKNYNDAYKASKN----LLSGNEWYCQQAFR 550
           G+DF+D   R V++ GIPF    D +V LK+ + D    S+     +L+G EWY QQA R
Sbjct: 639 GLDFADHAGRAVVITGIPFAMRTDPKVRLKREFLDQRGLSQKEGCKVLTGEEWYTQQASR 698

Query: 551 ALNQAIGRCIRHRFDYGAIVLLDERYKKEQNKIYISKWLRKSIRQYDSYGMSIEGLKSFF 610
           A+NQA+GR IRH  D+GAI+  DER+     +  IS W++  I+ Y  +G  +  L  FF
Sbjct: 699 AVNQAVGRVIRHCHDFGAIIFCDERFAHPNRQSQISLWIQPHIKCYSKFGDVVFTLTRFF 758

Query: 611 RDA 613
           RDA
Sbjct: 759 RDA 761



 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 9/146 (6%)

Query: 1   MAVLASRKHYCTNSHVN-----GKENLDEEWYAFKVKRPKLLSTSRNAVKVRGHPSLQRG 55
           M VL SR+  C +  V+      + N        + K+      SR +  ++ +P L   
Sbjct: 102 MVVLGSREQLCIHEEVSLLRGRAQTNACHSLCRKRTKKGYCGHYSRVSDFMKYNPGLG-- 159

Query: 56  GCHEVHDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAI 115
              +  DIEDLV IG+    C YY +R +     ++F PY+YLI+   R ++ +    +I
Sbjct: 160 --DDPIDIEDLVNIGRSNGPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSVCWNNSI 217

Query: 116 LILDEAHNIEDIARDAGSVDVDEDVL 141
           LI DEAHN+E +  DA S D+   +L
Sbjct: 218 LIFDEAHNLEGLCADAASFDLPSWLL 243


>GSVIVT01017082001 assembled CDS
          Length = 826

 Score =  148 bits (373), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 162/608 (26%), Positives = 260/608 (42%), Gaps = 100/608 (16%)

Query: 62  DIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAM-------------- 107
           DIEDLV +G+ +  C YY +RS+   A LV  PY  L++   R ++              
Sbjct: 261 DIEDLVHLGRRMGTCPYYGSRSIIPAADLVVLPYQSLLSKSSRESLGLNLKNNIVIIDEA 320

Query: 108 -----------DINITGAILILDEAHNIEDIAR-----DAGSVDVDEDVLIKLQMELQQL 151
                      D  IT + L    +H  + + R       G+    + +L+  +  LQ L
Sbjct: 321 HNLADSLISMYDAKITSSQLEHVHSHIKQYLQRFRNFLGPGNRRYIQTLLVVTRAFLQIL 380

Query: 152 C-LLDASIYEPLHDMAQDLVSWIKRRKSTLQKREFQNYFSCWTGD----KALKELQEANI 206
               D S+ +P HD A+          S++   +F   FS    +    K L  ++E+NI
Sbjct: 381 LNGKDTSLVDPGHD-AEKAFGAKSASDSSMAINDF--LFSLNIDNINLVKLLHYIKESNI 437

Query: 207 SQQCFPILLDCA----TKAIKAATDTELDTDHLSGMSVIVLEGLFSSLTYFFSRNGCHIS 262
             +        A      A+    ++  +   LSG    V   +  SLT   + +G    
Sbjct: 438 IHKVSGYGDKVAYLRKGSALNDGGESNEEGSTLSGFRAFV--DMLQSLT---NNDG---- 488

Query: 263 DYQLALRRYVKRDKKNPVGDWTCTLSLWCLNPAVVFSDIAKISLSVILTSGTLSPMNSFC 322
           D ++     + R K+   G     L    L    +FS+I   + +VIL  GTL P+    
Sbjct: 489 DGKII----ISRAKQACSGQQGGYLKYVMLTGEKIFSEIVDQAHAVILAGGTLQPIEETR 544

Query: 323 SEL-------GVHFGTCLEAPHVIDTESQVWAAVISTGPDNYPLNASYKTADEYAFQDAL 375
             L         HF +C    H+I  ES +    +S GP     + SY +       + L
Sbjct: 545 ERLFPWLTSDQFHFFSC---SHIIPPES-ILPVALSHGPSGQSFDFSYSSRSSSIMIEEL 600

Query: 376 GKTLEEICMIVPAGSLVFFPSYKLMEKLCSRWRETGQWARLNARKTLFVEPRGGSQEEDF 435
           G  L  +  +VP G +VFF S+    ++   W+ +G   R+  +K +F EPR   +  D 
Sbjct: 601 GLLLCNLVTVVPEGIVVFFSSFDYEGQVHDAWKASGILERIMKKKCVFREPR---KNTDV 657

Query: 436 DSVLKGYYDSIHQRSPQAVGRKRRTKKADLSHLKAMKSTETSEKDGAAFLAVCRGKVSEG 495
           + VLK Y ++I + S        R +K D              ++GA  LAV  GK+SEG
Sbjct: 658 EFVLKEYKEAIDKSSD-------RNQKED-----------PVPQNGAILLAVVGGKISEG 699

Query: 496 MDFSDDNARVVIVVGIPFPNIHDIQVGLKKNYNDAYKASKNLLSGNEWYCQQAFRALNQA 555
           ++FSD   R +++VG+P+P+  DI++  +  Y +          G E+Y     +A+NQ+
Sbjct: 700 INFSDGMGRCIVMVGLPYPSPSDIELLERVKYIEGLGH-----RGKEYYENLCMKAVNQS 754

Query: 556 IGRCIRHRFDYGAIVLLDERYKKEQNKIYIS-------KWLRKSIRQYDS-YGMSIEGLK 607
           IGR IRH  DY AI+L+D RY  +  K   S       +W++  +      YG +   L 
Sbjct: 755 IGRAIRHINDYAAILLVDARYASDPLKRSFSHPTNKLPQWIKDCLVPVTGKYGEAHRLLH 814

Query: 608 SFFRDAKE 615
            FF+  K+
Sbjct: 815 QFFKFNKK 822


>GSVIVT01011125001 assembled CDS
          Length = 922

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 45/342 (13%)

Query: 286 TLSLWCLNPAVVFSDIAKISLSVILTSGTLSPMNSFCSELGVHFGTCLEAPHVID-TESQ 344
            L L C + ++    + +   SV++TSGTLSP++ +   L  +F   +     +  T + 
Sbjct: 596 VLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLL--NFNPVVSRSFTMSLTRNC 653

Query: 345 VWAAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLC 404
           +   V++ G D  P++  +    +       G+ L E+  +VP G + FF SY  M+ + 
Sbjct: 654 ICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVSVVPDGIVCFFVSYSYMDGIV 713

Query: 405 SRWRETGQWARLNARKTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRRTKKAD 464
           + W E+G    +   K +F+E +          V++      + R     GR        
Sbjct: 714 NTWNESGILKEIMQHKLVFIETQ---------DVVETTLALDNYRRACDCGR-------- 756

Query: 465 LSHLKAMKSTETSEKDGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFP-NIHDIQVGL 523
                           GA F +V RGKV+EG+DF     R+VI+ G+PF   +  I +  
Sbjct: 757 ----------------GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLAR 800

Query: 524 KKNYNDAYKASKNLLSGNEWYCQQAFRALNQAIGRCIRHRFDYGAIVLLDERYKKEQNKI 583
            +   + ++  +      ++    A R   Q +GR IR + DYG ++  D+RY +   + 
Sbjct: 801 LEYLRETFQIKE-----GDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRS 855

Query: 584 YISKWLRKSIRQYD---SYGMSIEGLKSFFRDAKENIGKKMV 622
            +  W+   +R      S  M++   + F R   +   K  V
Sbjct: 856 KLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKAGV 897



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 34/205 (16%)

Query: 4   LASRKHYCTNSHVNGKENLDEEWYAFKVKRPKLLSTS--RNAVKVRGHPSLQRGGCHEVH 61
           L+SRK+ C N  VN                P + +     N  K      L  G    V+
Sbjct: 109 LSSRKNLCINPAVN----------------PNIPTCQFFENYEKAASEAVLPPG----VY 148

Query: 62  DIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINIT-GAILILDE 120
            ++DL   G+    C Y+ AR M   A +V   Y YL++P + G +   +   ++++ DE
Sbjct: 149 TLQDLRAFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDE 208

Query: 121 AHNIEDIARDAGSVDVDEDV-------LIKLQMELQQLCLLDASIYEP---LHDMAQDLV 170
           AHNI+++  +A SV V           L K+  E+     +  S  EP    H     LV
Sbjct: 209 AHNIDNVCIEALSVSVRRQTLEGATRNLSKMAQEINSGAHVSPSTTEPSLAFHAGCLFLV 268

Query: 171 SWIKRRKSTLQKREFQNYFSCWTGD 195
             I      L KR  +N ++ WT D
Sbjct: 269 EVIGSLVVRLWKR-IKNGWADWTLD 292