Jatropha Genome Database

JcCA0311161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.20 + phase: 1 /pseudo/partial
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035095001 assembled CDS                                        95   8e-21

>GSVIVT01035095001 assembled CDS
          Length = 1121

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 64/115 (55%), Gaps = 33/115 (28%)

Query: 15  YSLRQFPQLCWIFDELPKATIVSVSKPDTGDISLILLSYTIELQFKQ------------- 61
           +S RQ P+   IFDELPKATIV VS+PD  DIS  LL+YTIE ++KQ             
Sbjct: 14  FSFRQSPESTRIFDELPKATIVFVSRPDASDISPALLTYTIEFRYKQARSVAVIFRFYKF 73

Query: 62  --------------------FHWRLVKKASQVLNLHFALKKRAMIEEFHEKQEQV 96
                                 WRL+KKASQV  LHFALKKR +IEE  EKQEQV
Sbjct: 74  LITLGSNHIDLIKIDLLNKLISWRLIKKASQVFFLHFALKKRVIIEEIQEKQEQV 128