Jatropha Genome Database

JcCA0311161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.10 + phase: 0 
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031157001 assembled CDS                                       369   e-103

>GSVIVT01031157001 assembled CDS
          Length = 270

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/241 (74%), Positives = 201/241 (83%), Gaps = 5/241 (2%)

Query: 30  LKTQTDLSFFSTIPSSIHNLQRPLPILSRRVFLPSVSGIWDALTGGGGNNPRQAVLKIRR 89
           +K  +   FF+T  S IH+ Q P   LSRR+FLPSVSGIW+ALTGG  ++ R++ + IRR
Sbjct: 33  IKPLSSSPFFTTTASRIHSHQTPFHSLSRRLFLPSVSGIWNALTGG--DSYRESAMAIRR 90

Query: 90  GMSLFREGDVLGSLAEFDKAIELDSRQKACRFDLWQRGLSLYYLDRFEEGAKQFRLDVAQ 149
           GM LFR+GDV GSL EFDKAIELD RQKA    LWQRGLSLYYLDRFEEGA+QFRLDVAQ
Sbjct: 91  GMLLFRQGDVSGSLVEFDKAIELDPRQKAY---LWQRGLSLYYLDRFEEGAEQFRLDVAQ 147

Query: 150 NPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREAYNMFKDGGDPEKLVTAFS 209
           NPNDTEESIWCFLCEAQLYG DEAR+RFLEVGRDPRPVMREAYNMFKDGGDPEKLV  FS
Sbjct: 148 NPNDTEESIWCFLCEAQLYGADEARRRFLEVGRDPRPVMREAYNMFKDGGDPEKLVAQFS 207

Query: 210 NGSENEYFYASLYAGLYHESQKKLDAAKFHIVAACKSLYGQRSDDYMAALSKVHCLCRNW 269
                EYFYASLYAGLY+ESQ    +AK H++AAC+S YGQRSDDYMA+L+KVHCLCR+W
Sbjct: 208 GNQAGEYFYASLYAGLYYESQNDPGSAKLHLLAACQSPYGQRSDDYMASLAKVHCLCRSW 267

Query: 270 S 270
           S
Sbjct: 268 S 268