Jatropha Genome Database

JcCA0311061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311061.10 + phase: 0 
         (526 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024325001 assembled CDS                                       452   e-127

>GSVIVT01024325001 assembled CDS
          Length = 4326

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/337 (64%), Positives = 258/337 (76%), Gaps = 1/337 (0%)

Query: 15  LLAPDVTESNLQPFFVLHEGSSHXXXXXXXXXXXXXXXIDLSPTLTKNGENTETEKVEDS 74
           +  PD  E++LQPFFVLH+                   I+LSP   KN E  E    E+ 
Sbjct: 1   MATPDHAENDLQPFFVLHKALVQKSERKSSGSRKIRRRIELSPISAKNAEKMEIGTGEER 60

Query: 75  DDHQYLAKRMEAFEAVWSKIESTIKAVLRNLNASSFNEIHQWVCESFKTLTSFGTPSFHE 134
           DDH Y   RMEAF  VWSKIESTIK VLRN+N + FNEIH+WVCESF  + S GT +  +
Sbjct: 61  DDHHYEHLRMEAFNFVWSKIESTIKDVLRNINLNVFNEIHRWVCESFDAIKSCGT-TLTK 119

Query: 135 ATRPFPLVQGVISKQVFTGVVLTKNMEFVDDLLTFEELGLHLKSKGCHVANLSSLDFSVK 194
           AT  +P+V     +Q+FTG+V TKNMEFVDDL+TFEELGLHLKS GCHVANLSS+DFS  
Sbjct: 120 ATHSYPIVTDATFRQLFTGLVFTKNMEFVDDLMTFEELGLHLKSHGCHVANLSSIDFSAN 179

Query: 195 NGIGGCLRSLLRQLVMVTLDAPDISILATWYREQGNCNNPIVVIIDDLERCCGSVLSDFI 254
           NGIGGCLRSLLRQ +MVTLDA DISILA+WY +QGN N P+VVIIDD+ERCCGSVLSDFI
Sbjct: 180 NGIGGCLRSLLRQFLMVTLDAADISILASWYSDQGNYNKPVVVIIDDMERCCGSVLSDFI 239

Query: 255 LMLSEWILKIPVILIMGVATTLDALRNILPSNMIHHLCPCNFILRTPSERMDAIVEAVLV 314
           LMLSEW +K+PVILIMGVATTLDA RNILPSN++ HL    F+L +PSERMDAIVEAVLV
Sbjct: 240 LMLSEWAVKVPVILIMGVATTLDAPRNILPSNVLQHLHVSKFLLGSPSERMDAIVEAVLV 299

Query: 315 KQCSGFCISHKVAVFLRSYFVCQDGTITSFIKALKIA 351
           + CSGFC+ +KVA F+R+YF+ QDGT+TSFI+ALK+ 
Sbjct: 300 RLCSGFCVGYKVAAFMRNYFLRQDGTLTSFIRALKVG 336



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 3/145 (2%)

Query: 382  YGLSPEIVLKRAFDLPSCRRNKMAEQNGDILVHGLSELKKLQKQWSTIVMCLYEVVXXXX 441
            + L PE +LK AFDLPSCRRN   E+ G+ L H LSELK+LQK WST V+CLYE      
Sbjct: 3967 HALFPEEMLKYAFDLPSCRRNNTEERTGENLAHDLSELKRLQKCWSTTVLCLYEAGKYNK 4026

Query: 442  XXXXXXXXEALDPELGMLRVSDTHRGLQEDSIVFPTEQDLQKKYTSLRRGGIISQAMHKV 501
                    EA+ P LG    S+ H       I   ++  +  +Y    +   I QA+ KV
Sbjct: 4027 IQLLDLFCEAVVPCLGNSTASNHH---LGSGISSSSDHSIHHQYLISEKCSFICQAIRKV 4083

Query: 502  RDLPAMQLWKLLKGWEKHTIDIPQV 526
            RDLP + L++LLK WEK T D+ ++
Sbjct: 4084 RDLPVVLLYQLLKSWEKLTEDVIEI 4108