Jatropha Genome Database

JcCA0310961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310961.20 + phase: 0 /partial
         (70 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016712001 assembled CDS                                       120   1e-28
GSVIVT01016714001 assembled CDS                                       117   1e-27
GSVIVT01021520001 assembled CDS                                        86   4e-18
GSVIVT01038078001 assembled CDS                                        82   4e-17

>GSVIVT01016712001 assembled CDS
          Length = 364

 Score =  120 bits (301), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/70 (80%), Positives = 63/70 (90%), Gaps = 1/70 (1%)

Query: 1  MESEPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQ 60
          M +EPVNVNEFQELA+QALPKMYYD++AGGAEDQHTL+ENVEAF R   F  RILVDVS+
Sbjct: 1  MAAEPVNVNEFQELARQALPKMYYDFFAGGAEDQHTLRENVEAFSR-ITFQPRILVDVSK 59

Query: 61 IDMSTTVLGY 70
          IDMSTT+LGY
Sbjct: 60 IDMSTTILGY 69


>GSVIVT01016714001 assembled CDS
          Length = 364

 Score =  117 bits (292), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/70 (77%), Positives = 63/70 (90%), Gaps = 1/70 (1%)

Query: 1  MESEPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQ 60
          M +EPVNVNEFQELA+Q+LPKMYYD+++GGAEDQHTL+ENVEAF R   F  RILVDVS+
Sbjct: 1  MAAEPVNVNEFQELARQSLPKMYYDFFSGGAEDQHTLRENVEAFSRI-TFHPRILVDVSK 59

Query: 61 IDMSTTVLGY 70
          IDMSTTVLG+
Sbjct: 60 IDMSTTVLGF 69


>GSVIVT01021520001 assembled CDS
          Length = 372

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 2  ESEPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQI 61
          ++E  NV E++ +AK  LPKM +DYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+I
Sbjct: 3  DTEITNVTEYEAIAKAKLPKMAFDYYASGAEDQWTLRENRNAFSRI-LFRPRILIDVSKI 61

Query: 62 DMSTTVLGY 70
          DM+TTVLG+
Sbjct: 62 DMTTTVLGF 70


>GSVIVT01038078001 assembled CDS
          Length = 371

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E++ +AKQ LPKM +DYYA GAEDQ TL +N  AF +  +F  RIL+DVS+IDM
Sbjct: 2  EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQI-LFRPRILIDVSKIDM 60

Query: 64 STTVLGY 70
          +TTVLG+
Sbjct: 61 TTTVLGF 67