Jatropha Genome Database

JcCA0310961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310961.10 + phase: 0 /pseudo
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016714001 assembled CDS                                       481   e-136
GSVIVT01016712001 assembled CDS                                       480   e-136
GSVIVT01038078001 assembled CDS                                       351   2e-97
GSVIVT01021520001 assembled CDS                                       350   4e-97

>GSVIVT01016714001 assembled CDS
          Length = 364

 Score =  481 bits (1237), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/366 (66%), Positives = 278/366 (75%), Gaps = 27/366 (7%)

Query: 1   MAAEPVNVNEFQILAKQVLPKMYX---------TSTLGEQ-----RTSILYKIMWK---- 42
           MAAEPVNVNEFQ LA+Q LPKMY            TL E      R +   +I+      
Sbjct: 1   MAAEPVNVNEFQELARQSLPKMYYDFFSGGAEDQHTLRENVEAFSRITFHPRILVDVSKI 60

Query: 43  -------HFKKSSPIMVAPTAMHKLAHPEGEIXXXXXXXXCNTIMVLSFSATCSLEEVAA 95
                   F  SSPIM+APTAMHKLAHPEGEI        CNTIMVLSF +TC++EEVA+
Sbjct: 61  DMSTTVLGFNISSPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMSTCTVEEVAS 120

Query: 96  CCNAVRFFQLYVYKRRDIAANLVQRAERKGYKAIVLTVDTPRLGRREADIKNKMISPQLK 155
            CNAVRF QLYV+KRRD++A LVQRAER G+KAIVLT DTPRLGRREADIKN+M+SP+LK
Sbjct: 121 SCNAVRFLQLYVFKRRDVSAQLVQRAERNGFKAIVLTADTPRLGRREADIKNRMVSPRLK 180

Query: 156 NLEGLISTQVVSDKGSSLEAYANQILDASLSWKDVRWLKSITNLPILIKGVLTREDATKA 215
           N EGLIST+VV+DKGS++EA A+ + DASLSWKD+ WL+SITNLPILIKGVLT EDA KA
Sbjct: 181 NFEGLISTEVVTDKGSNIEALASGMFDASLSWKDIEWLRSITNLPILIKGVLTCEDAIKA 240

Query: 216 MEVGVDGIIVSNHGARQLDYTPATISALEEVVDAVRGKFPVLLDGGVRRGTDVFKXXXXX 275
           +EVGV GIIVSNHGARQLDY PATISALEEVV AV GK PVL DGG+RRGTD+FK     
Sbjct: 241 VEVGVSGIIVSNHGARQLDYVPATISALEEVVLAVGGKVPVLFDGGIRRGTDIFKALALG 300

Query: 276 XXXXXXXRPVIYGLAVKGEHGARRVIEMLKDELELTMALSGCPSLTDITRTHVRTKHDIG 335
                  RPVIYGLA KG+HG RRVIEMLKDELE+TMALSGC S+ DI+R HVRT+ D  
Sbjct: 301 AQAVFIGRPVIYGLAAKGKHGVRRVIEMLKDELEITMALSGCSSVKDISRRHVRTERD-- 358

Query: 336 KLQSML 341
           +LQSML
Sbjct: 359 RLQSML 364


>GSVIVT01016712001 assembled CDS
          Length = 364

 Score =  480 bits (1236), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/366 (66%), Positives = 277/366 (75%), Gaps = 27/366 (7%)

Query: 1   MAAEPVNVNEFQILAKQVLPKMYXTSTLG--------EQRTSILYKIMWK---------- 42
           MAAEPVNVNEFQ LA+Q LPKMY     G         +      +I ++          
Sbjct: 1   MAAEPVNVNEFQELARQALPKMYYDFFAGGAEDQHTLRENVEAFSRITFQPRILVDVSKI 60

Query: 43  -------HFKKSSPIMVAPTAMHKLAHPEGEIXXXXXXXXCNTIMVLSFSATCSLEEVAA 95
                   +K SSPIM+APT++ KLAHPEGEI        CNTIMVLSF ATC++EEVA+
Sbjct: 61  DMSTTILGYKISSPIMIAPTSLQKLAHPEGEIATARAAAACNTIMVLSFMATCTVEEVAS 120

Query: 96  CCNAVRFFQLYVYKRRDIAANLVQRAERKGYKAIVLTVDTPRLGRREADIKNKMISPQLK 155
            CNAVRF QLYV+KRRDI+A +VQ+AER G+KAIVLTVDTPRLGRREADIKN+M+SPQLK
Sbjct: 121 SCNAVRFLQLYVFKRRDISAQVVQKAERYGFKAIVLTVDTPRLGRREADIKNRMVSPQLK 180

Query: 156 NLEGLISTQVVSDKGSSLEAYANQILDASLSWKDVRWLKSITNLPILIKGVLTREDATKA 215
           N EGL++T V +DKGSSLEA A++I DASLSWKD+ WL+SITNLPILIKGVLT EDA KA
Sbjct: 181 NFEGLLTTDVSNDKGSSLEALASEIYDASLSWKDIEWLRSITNLPILIKGVLTCEDAIKA 240

Query: 216 MEVGVDGIIVSNHGARQLDYTPATISALEEVVDAVRGKFPVLLDGGVRRGTDVFKXXXXX 275
           +EVGV GIIVSNHGARQLDY PATISALEEVV AV G+ PVLLDGG+RRGTDVFK     
Sbjct: 241 VEVGVSGIIVSNHGARQLDYVPATISALEEVVRAVGGRVPVLLDGGIRRGTDVFKALALG 300

Query: 276 XXXXXXXRPVIYGLAVKGEHGARRVIEMLKDELELTMALSGCPSLTDITRTHVRTKHDIG 335
                  RPVIYGLA KGEHG RRV+EMLKDELE+TMALSGC S+ DI+R HVRT+ D  
Sbjct: 301 AQAVLVGRPVIYGLAAKGEHGVRRVLEMLKDELEITMALSGCSSVKDISRRHVRTERD-- 358

Query: 336 KLQSML 341
           +LQSML
Sbjct: 359 RLQSML 364


>GSVIVT01038078001 assembled CDS
          Length = 371

 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/361 (52%), Positives = 234/361 (64%), Gaps = 32/361 (8%)

Query: 4   EPVNVNEFQILAKQVLPKM---YXTSTLGEQRTSILYK-------IMWK----------- 42
           E  NV E++ +AKQ LPKM   Y  S   +Q T  LY+       I+++           
Sbjct: 2   EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWT--LYQNRHAFSQILFRPRILIDVSKID 59

Query: 43  ------HFKKSSPIMVAPTAMHKLAHPEGEIXXXXXXXXCNTIMVLSFSATCSLEEVAAC 96
                  FK S PIM+APTAM K+AHPEGE           TIM LS  AT S+EEVA+ 
Sbjct: 60  MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 119

Query: 97  CNAVRFFQLYVYKRRDIAANLVQRAERKGYKAIVLTVDTPRLGRREADIKNKMISP---Q 153
              +RFFQLYVYK R + A LV+RAER G+KAI LTVDTPRLGRREADIKN+   P    
Sbjct: 120 GPGIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 179

Query: 154 LKNLEGLISTQVVSDKGSSLEAYANQILDASLSWKDVRWLKSITNLPILIKGVLTREDAT 213
           LKN EGL   ++     S L +Y    +D +LSWKDV+WL++ITNLPIL+KGVLT ED  
Sbjct: 180 LKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTR 239

Query: 214 KAMEVGVDGIIVSNHGARQLDYTPATISALEEVVDAVRGKFPVLLDGGVRRGTDVFKXXX 273
            A++ G  GIIVSNHGARQLDY PATI ALEEVV A +G+ PV LDGGVRRGTDVFK   
Sbjct: 240 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALA 299

Query: 274 XXXXXXXXXRPVIYGLAVKGEHGARRVIEMLKDELELTMALSGCPSLTDITRTHVRTKHD 333
                    RPV++ LA +GE G R+V++ML++E ELTMALSGC SL +ITR H+ T+ +
Sbjct: 300 LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWE 359

Query: 334 I 334
           +
Sbjct: 360 V 360


>GSVIVT01021520001 assembled CDS
          Length = 372

 Score =  350 bits (899), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 192/359 (53%), Positives = 228/359 (63%), Gaps = 30/359 (8%)

Query: 4   EPVNVNEFQILAKQVLPKM---YXTS------TLGEQRTSILYKIMWK------------ 42
           E  NV E++ +AK  LPKM   Y  S      TL E R +   +I+++            
Sbjct: 5   EITNVTEYEAIAKAKLPKMAFDYYASGAEDQWTLRENRNA-FSRILFRPRILIDVSKIDM 63

Query: 43  -----HFKKSSPIMVAPTAMHKLAHPEGEIXXXXXXXXCNTIMVLSFSATCSLEEVAACC 97
                 FK S PIM+APTA  K+AHPEGE           TIM LS  AT S+EEVA+  
Sbjct: 64  TTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 123

Query: 98  NAVRFFQLYVYKRRDIAANLVQRAERKGYKAIVLTVDTPRLGRREADIKNKMISP---QL 154
             +RFFQLYVYK R + A LV+RAER G+KAI LTVDTPRLGRREADIKN+   P    L
Sbjct: 124 PGIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 183

Query: 155 KNLEGLISTQVVSDKGSSLEAYANQILDASLSWKDVRWLKSITNLPILIKGVLTREDATK 214
           KN EGL   ++     S L +Y    +D SLSWKDV+WL++IT LPIL+KGVLT EDA  
Sbjct: 184 KNFEGLDLGKMDKADDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 243

Query: 215 AMEVGVDGIIVSNHGARQLDYTPATISALEEVVDAVRGKFPVLLDGGVRRGTDVFKXXXX 274
           A+ VG  GIIVSNHGARQLDY PATI ALEEVV A +G+ PV LDGGVRRGTDVFK    
Sbjct: 244 AVNVGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 303

Query: 275 XXXXXXXXRPVIYGLAVKGEHGARRVIEMLKDELELTMALSGCPSLTDITRTHVRTKHD 333
                   RPV+Y LA  GE G R+ ++ML+DE ELTMALSGC SL +I+R H+ T  D
Sbjct: 304 GASGIFIGRPVVYSLAADGEAGVRKALQMLRDEFELTMALSGCRSLKEISRNHIMTDWD 362