Jatropha Genome Database

JcCA0310951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310951.10 - phase: 0 
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038208001 assembled CDS                                        47   2e-06

>GSVIVT01038208001 assembled CDS
          Length = 364

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 56/109 (51%), Gaps = 17/109 (15%)

Query: 1   MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREV---HHSLIVLSETTVVILARG 57
           +GL++  D ++ +I+ +   PS+ + ++ + R   ++ +    H  + ++E++  +  + 
Sbjct: 197 LGLNKNLDEIRGRIMGVKPLPSLREAFSEVRREESRKNLMMGSHQQLNMAESSA-LKTQF 255

Query: 58  GTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
                R   K G+P             +C+HC+  GH+++TC+K+HG P
Sbjct: 256 APFDNRQKIKGGRP-------------WCDHCRKPGHSRETCWKIHGKP 291