Jatropha Genome Database

JcCA0310901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310901.10 + phase: 0 
         (244 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016858001 assembled CDS                                        66   1e-11

>GSVIVT01016858001 assembled CDS
          Length = 325

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 80  FDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEITVG 139
           + P  P+F V S +IS F++      T L +     +  RNPN +L + Y  + V     
Sbjct: 154 YRPHRPSFAVTSLRISQFNVT----ATKLTSKLDLSITARNPNKKLVFIYDPTTVSAATS 209

Query: 140 KEQQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKSRSMVVNLRAK 199
                 +G+ ++  F+   KNTTS K+     +  ++    + LKS  KS+S+ +  +  
Sbjct: 210 -SSDVSVGTGTIPAFVHGTKNTTSFKVLISSTSETLDSSSITALKSDLKSKSLPLKFQLD 268

Query: 200 TTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGGNMP 235
           T V + V  GL+   + + V CDGI    I  G  P
Sbjct: 269 TKVKVKV-GGLKTNKVKIRVTCDGIK-ATIPAGKSP 302