Jatropha Genome Database

JcCA0310831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310831.20 - phase: 0 
         (569 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016904001 assembled CDS                                       827   0.0  
GSVIVT01025178001 assembled CDS                                       108   5e-24

>GSVIVT01016904001 assembled CDS
          Length = 570

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/492 (81%), Positives = 442/492 (89%), Gaps = 1/492 (0%)

Query: 78  SNSFFPKRGQTLELVCESLAFKGKGVCKVPDTGFVLMCDRALPGERFIGRVTRRKGSYAE 137
           + S+FPKRGQTLELVCESLAFKGKG+CKV DTGFV++CDRALPGERF+GRVTR+KG+YAE
Sbjct: 78  TQSYFPKRGQTLELVCESLAFKGKGLCKVADTGFVVLCDRALPGERFVGRVTRKKGNYAE 137

Query: 138 VTKVKTLSPHLDIVDAPCEYAAYCGGCKTQNLVYEAQLKAKEQQVHGLVVNVGKFSDKDP 197
           VTKV+T+SPH DIVDAPCEYA+ CGGCKTQNL YEAQ++AKEQQV  LV++VGKFSDKDP
Sbjct: 138 VTKVETISPHWDIVDAPCEYASNCGGCKTQNLSYEAQVRAKEQQVQELVIHVGKFSDKDP 197

Query: 198 EFYSIMKPIVPCDFQFHYRNKMEFSFGPQKWLPKELIGEKQEGSESYALGLHAPGFFDKV 257
           EF SIMKPIVPCD QFHYRNKMEFSF  QKWLP+EL+ EK++G+  YALGLHAPGFFDKV
Sbjct: 198 EFSSIMKPIVPCDVQFHYRNKMEFSFATQKWLPRELLHEKEDGASGYALGLHAPGFFDKV 257

Query: 258 LNVDGCLLQSEPANTVLATVQDCWRD-SVGLTPYNVYSHAGFLKHLMLRTGRNAESGSLE 316
           LNV+ CLLQSEPANTVLA +Q+CWRD   GL+PYNV+SH GFLKHL+LRTGR+ ++G  E
Sbjct: 258 LNVNKCLLQSEPANTVLAAIQECWRDPQFGLSPYNVHSHDGFLKHLVLRTGRDIKTGLPE 317

Query: 317 LMVNFVTSSYKPELLKPLMEKISAIPEXXXXXXXXXXXXXXXXXXEEEYTLYGKSTITEV 376
           LMVNFVTSSYKPELLKPL+EKISAIPE                  E+EY L+GKS ITE+
Sbjct: 318 LMVNFVTSSYKPELLKPLVEKISAIPEVVSIVNNINTSVGSTSVGEQEYILHGKSAITEI 377

Query: 377 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLARGA 436
           LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTL+R  
Sbjct: 378 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRV 437

Query: 437 KHVYGYEVVPQAISDAFRNAELNGITNATFVQGDLNKIGENFGNNFPKPDVVISDPNRPG 496
           +HVYGYEVV QA+SDA RNA+LNGI NATF++GDLNKIGENFG +FPKPDVVISDPNRPG
Sbjct: 438 RHVYGYEVVAQAVSDARRNAKLNGICNATFIEGDLNKIGENFGKDFPKPDVVISDPNRPG 497

Query: 497 MHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVKEQNIKGCYKLKSLQPVDMFPH 556
           MHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV EQNI+GCYKLKSLQPVDMFPH
Sbjct: 498 MHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVVEQNIEGCYKLKSLQPVDMFPH 557

Query: 557 TPHIECVCLLEL 568
           TPHIECVCLLEL
Sbjct: 558 TPHIECVCLLEL 569


>GSVIVT01025178001 assembled CDS
          Length = 788

 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 118/276 (42%), Gaps = 80/276 (28%)

Query: 370 KSTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIG 429
           ++ I + +  L F IS  +FFQ NT  AE LY L  D AGL  D   ++ D+ CGTGTIG
Sbjct: 514 EARIHDYISNLRFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPD--TLLFDVCCGTGTIG 571

Query: 430 LTLARGAKHVYGYEVVPQAISDAFRNAELNGITNATFV---------------------- 467
           LTLA     V G E+   A+SDA RNAELNGI N  FV                      
Sbjct: 572 LTLAHRVGMVVGIEMNASAVSDAQRNAELNGIKNCRFVCAKAEDVMGSLLKEYLSVPQRQ 631

Query: 468 -------QGDLNKIGENFG-----NNFPKPD----------------VVISDPNRPGMHM 499
                  Q D   I  +       NN   P+                V I DP R G+H 
Sbjct: 632 NEVPDFSQSDDKVISNSEDKMESINNALNPEGSSSHELESVRQFKNFVAIVDPPRGGLHP 691

Query: 500 KLIKFLLKLKA-PRIVYVSCNPATCARDLDYLCHGVKEQNIKGC---------------- 542
            +IK L       R+VY+SCNP +   +   LC    ++  KG                 
Sbjct: 692 IVIKALRTHACLRRLVYISCNPESLVANAIELCTPSADKTEKGNKNNRGWRNMSSAGLAR 751

Query: 543 YKLKSL------QP-----VDMFPHTPHIECVCLLE 567
           ++ KS+      QP     VD+FPHTPH E V LLE
Sbjct: 752 HRAKSMPNSEPFQPVKAMAVDLFPHTPHCEMVMLLE 787