Jatropha Genome Database
- JcCA0310831.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0310831.10 - phase: 0 /pseudo/partial/short
(41 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01011532001 assembled CDS 65 5e-12
GSVIVT01026338001 assembled CDS 59 4e-10
GSVIVT01026336001 assembled CDS 58 7e-10
GSVIVT01026331001 assembled CDS 58 9e-10
GSVIVT01035338001 assembled CDS 57 2e-09
GSVIVT01028932001 assembled CDS 57 2e-09
GSVIVT01019797001 assembled CDS 54 2e-08
GSVIVT01026925001 assembled CDS 53 3e-08
GSVIVT01026339001 assembled CDS 53 4e-08
GSVIVT01006002001 assembled CDS 52 8e-08
GSVIVT01026923001 assembled CDS 51 9e-08
GSVIVT01026924001 assembled CDS 51 9e-08
GSVIVT01025471001 assembled CDS 51 1e-07
GSVIVT01019916001 assembled CDS 50 2e-07
GSVIVT01026932001 assembled CDS 48 1e-06
>GSVIVT01011532001 assembled CDS
Length = 381
Score = 65.5 bits (158), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
LQ+EDGD IDCVDIY+QPAF HPLLKNH IQ+
Sbjct: 42 LQIEDGDAIDCVDIYQQPAFDHPLLKNHTIQM 73
>GSVIVT01026338001 assembled CDS
Length = 251
Score = 58.9 bits (141), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 6 TQLVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
T + ++ DGD+IDC+D +KQPAF HPLLKNHK+QV
Sbjct: 62 TVMTIESPDGDIIDCIDKWKQPAFDHPLLKNHKLQV 97
>GSVIVT01026336001 assembled CDS
Length = 430
Score = 58.2 bits (139), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 29/34 (85%)
Query: 8 LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
+ ++ DGD+IDC+D +KQPAF HPLLKNHK+Q+
Sbjct: 50 MTIESPDGDIIDCIDKWKQPAFDHPLLKNHKLQL 83
>GSVIVT01026331001 assembled CDS
Length = 419
Score = 57.8 bits (138), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 8 LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
+ ++ DGD+IDC+D +KQPAF HPLLKNHK+Q
Sbjct: 71 MTIESPDGDIIDCIDKWKQPAFDHPLLKNHKLQ 103
>GSVIVT01035338001 assembled CDS
Length = 819
Score = 56.6 bits (135), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
+Q EDGD+IDCVDI+KQPA HP LK H IQV
Sbjct: 427 IQSEDGDIIDCVDIHKQPALDHPALKKHIIQV 458
>GSVIVT01028932001 assembled CDS
Length = 1022
Score = 56.6 bits (135), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 8 LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
L++Q E GD+ DCVDI KQPA HPLLKNH++Q
Sbjct: 176 LLVQTEYGDIFDCVDINKQPALDHPLLKNHRVQ 208
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 13 EDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
E GD+ DCVDI KQPA HPLLKNHK+Q
Sbjct: 763 EYGDIFDCVDINKQPALDHPLLKNHKVQ 790
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 9 VLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
++ E GD+ DCVDI KQPA HPLLKNH++Q
Sbjct: 521 LISTEYGDIFDCVDINKQPALDHPLLKNHRVQ 552
>GSVIVT01019797001 assembled CDS
Length = 355
Score = 53.5 bits (127), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
+Q + GD+ DCVD YKQPAF HPLLKNH
Sbjct: 33 IQTKHGDIYDCVDFYKQPAFDHPLLKNHNFH 63
>GSVIVT01026925001 assembled CDS
Length = 371
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
++ + G + DCVDI+KQP+ HPLLKNHK+QV
Sbjct: 47 IRTDSGQIFDCVDIHKQPSLDHPLLKNHKVQV 78
>GSVIVT01026339001 assembled CDS
Length = 403
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 8 LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
+ ++ DGD+IDCV KQPA HPLLKNHKIQ
Sbjct: 32 MTIESPDGDIIDCVHKRKQPALDHPLLKNHKIQ 64
>GSVIVT01006002001 assembled CDS
Length = 409
Score = 51.6 bits (122), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
++ DGD+IDCV + QPAF HP+LKNH IQ+
Sbjct: 46 IKSRDGDIIDCVRVTHQPAFDHPMLKNHTIQM 77
>GSVIVT01026923001 assembled CDS
Length = 275
Score = 51.2 bits (121), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 28/32 (87%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
++ ++G++ +CVDI+KQP+ HPLLKNHK+Q+
Sbjct: 48 IKTDNGEIFNCVDIHKQPSLDHPLLKNHKVQM 79
>GSVIVT01026924001 assembled CDS
Length = 389
Score = 51.2 bits (121), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 28/32 (87%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
++ ++G++ +CVDI+KQP+ HPLLKNH++QV
Sbjct: 50 IKTDNGEIFNCVDIHKQPSLDHPLLKNHEVQV 81
>GSVIVT01025471001 assembled CDS
Length = 411
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
++ DGD+IDCV I QPAF HP LKNH IQ+
Sbjct: 48 IKSSDGDLIDCVHISHQPAFDHPFLKNHTIQM 79
>GSVIVT01019916001 assembled CDS
Length = 369
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 11 QVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
Q +DG +DC+DI KQ AF HPLL+NH IQ+
Sbjct: 50 QTQDGSTVDCIDINKQLAFDHPLLQNHTIQM 80
>GSVIVT01026932001 assembled CDS
Length = 388
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 15 GDVIDCVDIYKQPAFSHPLLKNHKIQ 40
GDV DCVDIY+QP+ + P L+NH+IQ
Sbjct: 55 GDVFDCVDIYRQPSLNDPFLENHRIQ 80