Jatropha Genome Database

JcCA0310371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310371.10 - phase: 0 
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035765001 assembled CDS                                       181   1e-46
GSVIVT01035760001 assembled CDS                                       160   4e-40
GSVIVT01035758001 assembled CDS                                       154   2e-38
GSVIVT01035762001 assembled CDS                                       152   6e-38
GSVIVT01017296001 assembled CDS                                       107   2e-24
GSVIVT01035835001 assembled CDS                                       107   4e-24
GSVIVT01035834001 assembled CDS                                       104   2e-23
GSVIVT01011613001 assembled CDS                                        83   7e-17
GSVIVT01028427001 assembled CDS                                        80   5e-16
GSVIVT01033174001 assembled CDS                                        79   1e-15
GSVIVT01033173001 assembled CDS                                        77   5e-15

>GSVIVT01035765001 assembled CDS
          Length = 285

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 98/118 (83%)

Query: 59  VSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISA 118
           +  GDVGTA  Y+PPYLPTACYGND S+FPSSN FA+A EGIWDNGAACGRQYLVRCISA
Sbjct: 167 ICSGDVGTAGQYAPPYLPTACYGNDVSEFPSSNFFASAGEGIWDNGAACGRQYLVRCISA 226

Query: 119 VAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
           V P TC   + I+++IVDRA TSVSRPSRNGAT++LS  AF  +A+ S SS+N+EFQQ
Sbjct: 227 VVPMTCIAGQTIQIKIVDRAVTSVSRPSRNGATMVLSTTAFGAVANASASSINIEFQQ 284



 Score =  172 bits (437), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/143 (61%), Positives = 101/143 (70%), Gaps = 2/143 (1%)

Query: 34  KKMDKPQQPSYXXXXXXXAIATLFPVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLF 93
           ++M KPQ   +         A LF  +  DVG AA Y PPYLPTAC GND S FPSSNLF
Sbjct: 2   QEMSKPQ--VFLQCLLLLLCAELFHFTLADVGVAAQYRPPYLPTACSGNDPSPFPSSNLF 59

Query: 94  AAASEGIWDNGAACGRQYLVRCISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATII 153
           AAA EG WDNGAACGRQY VRCISA  P TC  ++ I V+IVDRAQT+VSRPSR+GA ++
Sbjct: 60  AAAGEGAWDNGAACGRQYRVRCISAPTPGTCKADQSIIVKIVDRAQTTVSRPSRDGAVLV 119

Query: 154 LSDIAFAQIASPSVSSVNVEFQQ 176
           LS  AF  IA+PS + VNVEF Q
Sbjct: 120 LSTTAFGAIANPSAAWVNVEFAQ 142


>GSVIVT01035760001 assembled CDS
          Length = 132

 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 89/121 (73%), Gaps = 7/121 (5%)

Query: 56  LFPVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRC 115
           L  V  GD+GTA  Y+PPYLPTACYGND S+FPSSNLFA+A +GIWDNGAACGRQY VRC
Sbjct: 19  LLHVCSGDIGTAGQYAPPYLPTACYGNDVSKFPSSNLFASAGDGIWDNGAACGRQYFVRC 78

Query: 116 ISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQ 175
           +SA  P  C   +II+V IVDRA       SRNG  ++LS IAF  IA+PS S VN+EF 
Sbjct: 79  LSAQTPGICKAGQIIKVNIVDRA-------SRNGVMLVLSTIAFGAIANPSASFVNIEFA 131

Query: 176 Q 176
           +
Sbjct: 132 E 132


>GSVIVT01035758001 assembled CDS
          Length = 131

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 91/124 (73%), Gaps = 7/124 (5%)

Query: 53  IATLFPVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYL 112
           ++ L  V  GDVGTA  Y PPYLPTACYGND S+FPSS+LFA+A +GIWDNGAACGRQY 
Sbjct: 14  LSELLHVCSGDVGTAGQYPPPYLPTACYGNDMSKFPSSSLFASAGDGIWDNGAACGRQYF 73

Query: 113 VRCISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNV 172
           V+C+SA  P  C  ++II+V++VD+A       SRNG  ++LS IAF  IA+PS   VN+
Sbjct: 74  VKCLSAQIPGICKADQIIKVKVVDKA-------SRNGEILVLSTIAFGAIANPSAVWVNI 126

Query: 173 EFQQ 176
           EF +
Sbjct: 127 EFAE 130


>GSVIVT01035762001 assembled CDS
          Length = 173

 Score =  152 bits (385), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 86/112 (76%), Gaps = 7/112 (6%)

Query: 65  GTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISAVAPNTC 124
           GTA  Y+PPYLPTACYGND S+FPSSNLFA+A +GIWDNGAACGRQY V C+SA  P TC
Sbjct: 68  GTAGQYAPPYLPTACYGNDVSKFPSSNLFASAGDGIWDNGAACGRQYFVMCLSAQTPGTC 127

Query: 125 NREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
              +II+V+IVD+A       SRNG  ++LS IAF  IA+PS +SVNVEF +
Sbjct: 128 KAGQIIKVKIVDKA-------SRNGVILVLSTIAFGAIANPSAASVNVEFTE 172


>GSVIVT01017296001 assembled CDS
          Length = 130

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 7/116 (6%)

Query: 61  HGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISAVA 120
           HGD+GTA  Y+PPY PT C GN + QFP  NLF + SEG+WDNGAACGR+Y +RC+S  A
Sbjct: 21  HGDIGTANSYNPPYTPTRCNGNRQDQFPPGNLFVSVSEGLWDNGAACGRRYRLRCLSG-A 79

Query: 121 PNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
              C ++  + V++VD       RP    +T++LS+ AFA I+      +NVE+ Q
Sbjct: 80  KKPC-KDGTVDVKVVDFCSV---RPCP--STLLLSNDAFAAISHSPSMKINVEYIQ 129


>GSVIVT01035835001 assembled CDS
          Length = 129

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 7/120 (5%)

Query: 57  FPVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCI 116
            P   GD+GTA  Y PPYLPT C G D++QFP   LF +AS+G+WDNGAACGR+Y +RCI
Sbjct: 17  IPGILGDIGTATSYDPPYLPTKCKGYDQNQFPEGGLFVSASDGLWDNGAACGRRYRLRCI 76

Query: 117 SAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
           S +    C +E  I V++VD  Q    RP    AT++LS+ AF  I+    + +N+E+ Q
Sbjct: 77  SGLR-RPC-KEGSIVVQVVDFCQ---HRPCP--ATMVLSNKAFDAISRIPSAKINIEYAQ 129


>GSVIVT01035834001 assembled CDS
          Length = 125

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 74/115 (64%), Gaps = 7/115 (6%)

Query: 62  GDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISAVAP 121
           GD+GTA  Y PPY PT CYG+ + QFP  NLF A SEG+WDNGAACGR+Y +RC+S    
Sbjct: 17  GDIGTATSYKPPYTPTRCYGSRQDQFPPGNLFIAVSEGLWDNGAACGRRYRLRCLS--GN 74

Query: 122 NTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
           N   ++  I V++VD    S   PS    TI++S+ AF+ ++    + +N+E+ Q
Sbjct: 75  NRPCKDGTIDVKVVDYCTKSPC-PS----TILMSNDAFSALSRSPDAKINIEYIQ 124


>GSVIVT01011613001 assembled CDS
          Length = 141

 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 13/117 (11%)

Query: 63  DVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRC---ISAV 119
           D GTA +Y+PPY+P++C G  +       + AAAS+ IWDN  ACGR Y V+C    +A 
Sbjct: 26  DTGTATYYTPPYVPSSCNGFQDDGV----MIAAASDAIWDNRGACGRNYEVKCEGATNAG 81

Query: 120 APNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
            P+ C  ++ + V+IVD        P     TI LS  AFA IA P    + + FQQ
Sbjct: 82  DPHPCRGDQSVVVKIVDYC------PPGCRGTIDLSQEAFASIADPDAGKIKISFQQ 132


>GSVIVT01028427001 assembled CDS
          Length = 291

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 62/117 (52%), Gaps = 17/117 (14%)

Query: 65  GTAAHYSPPYLPTAC--YGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRC---ISAV 119
           GTA +Y+PPY+P++C  Y ND        + AAAS+ IWDN  ACGR Y V+C    +A 
Sbjct: 98  GTATYYTPPYVPSSCNGYQND------GVMIAAASDAIWDNRGACGRNYKVKCEGATNAG 151

Query: 120 APNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
            P  C   + + V+IVD        P     TI LS  AFA IA P    + + FQQ
Sbjct: 152 VPQPCRGAQSVVVKIVDYC------PPGCRGTIDLSQEAFASIADPDAGKIKISFQQ 202


>GSVIVT01033174001 assembled CDS
          Length = 183

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 12/117 (10%)

Query: 63  DVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISAV--- 119
           D GTA +Y+PPY P+ACYG ++       + AAAS+  W++G ACG+ Y V C+S     
Sbjct: 31  DSGTATYYTPPYTPSACYGFEDDGV----MIAAASDTFWNDGGACGQMYQVTCLSGTNEG 86

Query: 120 APNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
            P  C     + V+IVD        P     TI LS  AF  IA      +N+ +QQ
Sbjct: 87  TPEPCLGSGSVVVKIVDHCP-----PGSCRGTIDLSQEAFESIADTDAGVINISYQQ 138


>GSVIVT01033173001 assembled CDS
          Length = 186

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 12/117 (10%)

Query: 63  DVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRCISAV--- 119
           D GTA +Y+PPY P+ACYG ++       + AAAS+  W++G ACG+ Y V C+S     
Sbjct: 30  DSGTATYYTPPYTPSACYGFEDDGV----MIAAASDVFWNDGGACGQMYQVTCLSGTNEG 85

Query: 120 APNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEFQQ 176
            P  C       V+IVD       R      TI LS  AF  IA  +   +N+ +QQ
Sbjct: 86  TPEPCLGSGSAVVKIVDHCPPGSCR-----GTIDLSQKAFESIADTNAGVINISYQQ 137