Jatropha Genome Database

JcCA0310301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310301.10 + phase: 0 
         (432 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033651001 assembled CDS                                       611   e-175
GSVIVT01031313001 assembled CDS                                       499   e-141
GSVIVT01028205001 assembled CDS                                       341   4e-94
GSVIVT01031492001 assembled CDS                                       110   1e-24
GSVIVT01017675001 assembled CDS                                        64   2e-10

>GSVIVT01033651001 assembled CDS
          Length = 445

 Score =  611 bits (1576), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/394 (76%), Positives = 323/394 (81%), Gaps = 37/394 (9%)

Query: 34  FFMQLKEMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMV 93
           +      M+TFLFTSESVNEGHPDKLCDQ+SDA+LDACLEQDP+SKVACETC+KTNMVMV
Sbjct: 86  YLFNFINMDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCSKTNMVMV 145

Query: 94  FGEITTKAKVDYEKIVRQTCRGIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTK 153
           FGEITTKAKVDYEKIVR TCRGIGF+S DVGLDAD CKVLVNIEQQSPDIAQGVHGH +K
Sbjct: 146 FGEITTKAKVDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLSK 205

Query: 154 RPEEIGAGDQGHMFGYATDETPEYMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVT 213
           +PEEIGAGDQGHMFGYATDETPE MPL+HVLATKLGAKLTEVRKN TCPWLRPDGKTQVT
Sbjct: 206 KPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVT 265

Query: 214 VEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLN 273
           VEY N+ GAMVP+RVHTVLISTQHDETVTND+IA +L+EHVIKP                
Sbjct: 266 VEYRNEGGAMVPIRVHTVLISTQHDETVTNDQIAKELREHVIKP---------------- 309

Query: 274 PSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSI 333
                               IIIDTY             KDPTKVDRSGAYIVRQAAKS+
Sbjct: 310 --------------------IIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSV 349

Query: 334 VANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLD 393
           VA+GLARRC+VQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KENFDFRPGM+ INLD
Sbjct: 350 VASGLARRCLVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMIAINLD 409

Query: 394 LKRGGN-RFLKTAAYGHFGRDDPDFTWEVVKPLK 426
           LKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct: 410 LKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 443


>GSVIVT01031313001 assembled CDS
          Length = 299

 Score =  499 bits (1285), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/395 (66%), Positives = 280/395 (70%), Gaps = 101/395 (25%)

Query: 38  LKEMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEI 97
           L +M+TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTN+VM+FGEI
Sbjct: 4   LWKMDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMIFGEI 63

Query: 98  TTKAKVDYEKIVRQTCRGIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEE 157
           TTKA +DYEKIVR TCR +GF                    QSPDIAQGVHGH TKRPEE
Sbjct: 64  TTKANLDYEKIVRDTCRAVGF--------------------QSPDIAQGVHGHLTKRPEE 103

Query: 158 IGAGDQGHMFGYATDETPEYMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYY 217
           IGAGDQGHMFGYATDETPE MPLSHVLATKLGA+LTEVRKNGTCPWLRPDGK        
Sbjct: 104 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGK-------- 155

Query: 218 NDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGR 277
                            TQHDETVTNDEIAADLKEHVIKP+ P K         ++ SG 
Sbjct: 156 -----------------TQHDETVTNDEIAADLKEHVIKPIDPTK---------VDRSGA 189

Query: 278 FVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANG 337
           +++                                              RQAAKSIVA+G
Sbjct: 190 YIV----------------------------------------------RQAAKSIVASG 203

Query: 338 LARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRG 397
           LARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDKEILKIVKE+FDFRPGM+ INLDLKRG
Sbjct: 204 LARRCIVQVSYAIGVPEPLSVFVDTYATGKIPDKEILKIVKESFDFRPGMIAINLDLKRG 263

Query: 398 GN-RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 431
           GN RFLKTAAYGHFGRDDPDFTWEVVKPLK EK Q
Sbjct: 264 GNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQ 298


>GSVIVT01028205001 assembled CDS
          Length = 235

 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 173/234 (73%), Positives = 180/234 (76%), Gaps = 40/234 (17%)

Query: 28  LMLAFVFFMQLKEMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 87
           L+  +    QL+ METFLFTSESVNEGHPDKLCDQISDAVLDACL QDPDSKVACETCTK
Sbjct: 19  LLSHYFSLSQLERMETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTK 78

Query: 88  TNMVMVFGEITTKAKVDYEKIVRQTCRGIGFISDDVGLDADKCKVLVNIEQQSPDIAQGV 147
           TNMVMVFGEITTKA +DYEKIVR TCR IGF+SDDVGLDAD CKVLVNIEQQSPDIAQGV
Sbjct: 79  TNMVMVFGEITTKADIDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGV 138

Query: 148 HGHFTKRPEEIGAGDQGHMFGYATDETPEYMPLSHVLATKLGAKLTEVRKNGTCPWLRPD 207
           HGH TKRPEEIGAGDQGH+               HVLATKLGA+LTEVRKNGTC WLRPD
Sbjct: 139 HGHLTKRPEEIGAGDQGHI---------------HVLATKLGARLTEVRKNGTCSWLRPD 183

Query: 208 GKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 261
           GK                         TQHDETVTNDEIAADLKEHVIKPVIPE
Sbjct: 184 GK-------------------------TQHDETVTNDEIAADLKEHVIKPVIPE 212


>GSVIVT01031492001 assembled CDS
          Length = 178

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 64/105 (60%), Gaps = 39/105 (37%)

Query: 41  METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 100
           M+TFLFTSESVNEGHPDKLCDQ+SDA+LDACLEQDP+SKVA                   
Sbjct: 1   MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVAS------------------ 42

Query: 101 AKVDYEKIVRQTCRGIGFISDDVGLDADKCKVLVNIEQQSPDIAQ 145
                                DVGLDAD CKVLVNIEQQSPDIAQ
Sbjct: 43  ---------------------DVGLDADNCKVLVNIEQQSPDIAQ 66



 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 68/115 (59%), Gaps = 30/115 (26%)

Query: 211 QVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 270
           QVTVEY N+ GAMVP+RVHTVL+STQHDETVTN++IA DLKEHVIKPVIP          
Sbjct: 66  QVTVEYRNEGGAMVPIRVHTVLVSTQHDETVTNEQIAKDLKEHVIKPVIP---------- 115

Query: 271 HLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYI 325
                                +KIIIDTY             KDPTKVDRSGAYI
Sbjct: 116 --------------------PQKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYI 150



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%), Gaps = 1/36 (2%)

Query: 394 LKRGGNRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 429
           + R G  ++KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct: 143 VDRSG-AYIKTAAYGHFGRDDPDFSWETVKQLKPEK 177


>GSVIVT01017675001 assembled CDS
          Length = 168

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 30/31 (96%)

Query: 166 MFGYATDETPEYMPLSHVLATKLGAKLTEVR 196
           MFGYATDETPE MPLSHVLATKLGA+LTEVR
Sbjct: 1   MFGYATDETPELMPLSHVLATKLGARLTEVR 31



 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 25/32 (78%), Gaps = 1/32 (3%)

Query: 402 LKTAAYGHFGR-DDPDFTWEVVKPLKWEKPQA 432
           L+ +  G + R DDPDFTWEVVKPLKWEK QA
Sbjct: 137 LERSPTGRYSRLDDPDFTWEVVKPLKWEKTQA 168