Jatropha Genome Database

JcCA0310221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.20 + phase: 0 
         (524 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021978001 assembled CDS                                       942   0.0  
GSVIVT01021979001 assembled CDS                                       725   0.0  
GSVIVT01017822001 assembled CDS                                       707   0.0  
GSVIVT01021977001 assembled CDS                                       469   e-132

>GSVIVT01021978001 assembled CDS
          Length = 531

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/524 (84%), Positives = 484/524 (92%)

Query: 1   MSDLQLSNREVQSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQD 60
           +SDLQ S   V+S+PTLLCTPLMGTTV+QML EM+KAKEIGAD+VEIRLDCLRNFSP QD
Sbjct: 8   VSDLQTSVSGVRSNPTLLCTPLMGTTVEQMLTEMRKAKEIGADIVEIRLDCLRNFSPAQD 67

Query: 61  LEILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSS 120
           L+ILIK+SPLPTLVTYRP+WEGGQYEGDE KRQDALRLAM+LGA+Y+DVELEVAH+FN+S
Sbjct: 68  LQILIKQSPLPTLVTYRPIWEGGQYEGDENKRQDALRLAMELGASYIDVELEVAHEFNNS 127

Query: 121 IYGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRI 180
           IYGKKP NF+VIVSSHNFHNTPS EAI NLVARIQA+GADI+KIATTALDITD AR+ ++
Sbjct: 128 IYGKKPQNFKVIVSSHNFHNTPSTEAIGNLVARIQASGADIVKIATTALDITDVARVLQV 187

Query: 181 MVHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRL 240
            VHSQ+P I IVMGERG ISRLLSPKFGGYLTYGALEAGAISAPGQPT KDLLDLYNFRL
Sbjct: 188 TVHSQVPTIAIVMGERGLISRLLSPKFGGYLTYGALEAGAISAPGQPTAKDLLDLYNFRL 247

Query: 241 IRPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASG 300
           I+PDTKVYGIIGKPVGHSKSPLLFNAAFK VGLNAVY+H LVDDVEKFFNTYS+ DF SG
Sbjct: 248 IKPDTKVYGIIGKPVGHSKSPLLFNAAFKKVGLNAVYVHLLVDDVEKFFNTYSAPDFISG 307

Query: 301 CSCTIPHKEVALKCMDEIDPIARKIGAINNIVRRPDGTLMAYNTDYIGAISAIEDGLREL 360
           CSCTIPHKEVA+KCMD IDPIARKIGAINNIVR+PDG L A+NTDYIGAI AIEDGLRE 
Sbjct: 308 CSCTIPHKEVAIKCMDTIDPIARKIGAINNIVRKPDGKLTAFNTDYIGAIEAIEDGLRES 367

Query: 361 NGAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQA 420
           NG+ PA  SPL GKLFVVLGAGGAGKSLAYGA +KGARVVVANRT+ERAK+LADKVGGQA
Sbjct: 368 NGSSPAVGSPLAGKLFVVLGAGGAGKSLAYGAKEKGARVVVANRTFERAKDLADKVGGQA 427

Query: 421 MTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLLRE 480
           +TLAE E+FHPE+GM+LANTTSVGMKP  + TP+PKH LKHY L FDAIYTPKDTRLLRE
Sbjct: 428 LTLAEIENFHPEEGMILANTTSVGMKPKINDTPIPKHALKHYSLVFDAIYTPKDTRLLRE 487

Query: 481 AKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKHA 524
           AKESG +IVYGTEMLIRQGFEQYKNFTGLPAPEELFR+LM KHA
Sbjct: 488 AKESGKIIVYGTEMLIRQGFEQYKNFTGLPAPEELFRELMSKHA 531


>GSVIVT01021979001 assembled CDS
          Length = 600

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/523 (69%), Positives = 434/523 (82%), Gaps = 4/523 (0%)

Query: 2   SDLQLSNREVQSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQDL 61
           SD+Q+     ++S TL+C P+M  +VDQML +++KAKE+G D+VEIRLD L+NFSP QDL
Sbjct: 80  SDIQIPEGARRNS-TLICVPIMADSVDQMLGQIRKAKEVGGDLVEIRLDYLKNFSPRQDL 138

Query: 62  EILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSSI 121
           + L+K+SPLPTLVTYRP WEGGQY+GDE KR DALRLA++LGA+Y+DVEL+VA +F +SI
Sbjct: 139 QFLVKQSPLPTLVTYRPTWEGGQYDGDEGKRLDALRLAIELGADYIDVELQVAPEFINSI 198

Query: 122 YGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRIM 181
            GK   N ++IVSSHN+ N+PSAE + NLVARIQATGADI+KIATTALDITDCARIF+++
Sbjct: 199 QGKTSGNVKIIVSSHNYQNSPSAEELGNLVARIQATGADIVKIATTALDITDCARIFQVL 258

Query: 182 VHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRLI 241
            HSQ+P IGI M ERG ISR+LS KFG YLT+G+LEAG +SAPGQPTVKDLLDLYNFR I
Sbjct: 259 AHSQVPTIGIAMAERGLISRILSAKFGSYLTFGSLEAGVVSAPGQPTVKDLLDLYNFRQI 318

Query: 242 RPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASGC 301
            PDTKV+G+IGKP+GHSKSP L+N+AFKSVG N +Y+  LVD V+ F  TYSS DF  G 
Sbjct: 319 GPDTKVHGVIGKPIGHSKSPHLYNSAFKSVGFNGIYLPLLVDSVKNFLTTYSSPDFV-GY 377

Query: 302 SCTIPHKEVALKCMDEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGLREL 360
           S TIPHKE  L+C DEIDPIA+ IGAI+ ++RRP DG LM YN DY+GAI+AIE+GLR  
Sbjct: 378 SYTIPHKEDGLRCCDEIDPIAQAIGAISCMIRRPADGKLMGYNVDYLGAIAAIEEGLRAS 437

Query: 361 NGAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQA 420
           NG    G SPL GKLFVV+GAGGAGK+LAYG  +KGARVVVANRT+E+AKELA KVGG+A
Sbjct: 438 NGTTSVG-SPLAGKLFVVIGAGGAGKALAYGGKEKGARVVVANRTFEKAKELASKVGGEA 496

Query: 421 MTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLLRE 480
           MTLAE E+FHPEDGM+LANTTSVGMKPN D TPL K  L  Y L FDAIYTPK TRLLRE
Sbjct: 497 MTLAELENFHPEDGMILANTTSVGMKPNIDNTPLSKKALSRYSLVFDAIYTPKLTRLLRE 556

Query: 481 AKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKH 523
           A+ESGA+IVYGTEM I Q F Q++ FTGLPAP+EL R+++ ++
Sbjct: 557 AQESGAIIVYGTEMFINQAFVQFERFTGLPAPKELIREVLVRN 599


>GSVIVT01017822001 assembled CDS
          Length = 495

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/492 (69%), Positives = 415/492 (84%), Gaps = 2/492 (0%)

Query: 30  MLIEMQKAKEIGADVVEIRLDCLRNFSPTQDLEILIKRSPLPTLVTYRPVWEGGQYEGDE 89
           M+++M KAK  GAD+VE+RLD L+ F+P QDLE+LI++ PLPTL TYRP WEGGQYEGDE
Sbjct: 1   MVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRKCPLPTLFTYRPKWEGGQYEGDE 60

Query: 90  TKRQDALRLAMQLGANYVDVELEVAHDFNSSIYGKKPDNFRVIVSSHNFHNTPSAEAIAN 149
             R+DALRLAM+LGA+YVD+EL+VAH+F +SI+G+KP+ F+VIVSSHN+ NTPS E + N
Sbjct: 61  NSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPEKFKVIVSSHNYQNTPSVEDLGN 120

Query: 150 LVARIQATGADIIKIATTALDITDCARIFRIMVHSQIPVIGIVMGERGQISRLLSPKFGG 209
           LV  IQATGADI+KIATTAL+ITD ARIF+I VHSQ+PVIG+VMGERG ISR+L PKF G
Sbjct: 121 LVVSIQATGADIVKIATTALEITDVARIFQITVHSQVPVIGLVMGERGLISRILCPKFSG 180

Query: 210 YLTYGALEAGAISAPGQPTVKDLLDLYNFRLIRPDTKVYGIIGKPVGHSKSPLLFNAAFK 269
           YLT+G+LE G +SAPGQPT+KDLL+LYNFR + PDTKV+G+IGKPV HSKSP L+N AFK
Sbjct: 181 YLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPDTKVFGVIGKPVSHSKSPHLYNEAFK 240

Query: 270 SVGLNAVYMHFLVDDVEKFFNTYSSVDFASGCSCTIPHKEVALKCMDEIDPIARKIGAIN 329
           SVG N VY+H LVDD+ KFF+TYS+ DFA G SCTIPHKE ALKC DE+ P+A+ IGA+N
Sbjct: 241 SVGFNGVYVHLLVDDIAKFFHTYSAADFA-GFSCTIPHKEAALKCCDEVSPVAKSIGAVN 299

Query: 330 NIVRRP-DGTLMAYNTDYIGAISAIEDGLRELNGAVPAGTSPLKGKLFVVLGAGGAGKSL 388
            I+RRP DG L  YNTDY+GAISAIEDGLR+L+       SPL GKLFVV+GAGGAGK+L
Sbjct: 300 CIIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKISSTSGSPLAGKLFVVIGAGGAGKAL 359

Query: 389 AYGAAQKGARVVVANRTYERAKELADKVGGQAMTLAEAEHFHPEDGMVLANTTSVGMKPN 448
           AYGA +KGARVV+ANRTY RA+ELAD VGG A++LA+  +FHPE+GM+LANTTS+GM+P 
Sbjct: 360 AYGAKEKGARVVIANRTYARARELADAVGGDALSLADLNNFHPENGMILANTTSIGMQPK 419

Query: 449 YDATPLPKHVLKHYCLAFDAIYTPKDTRLLREAKESGAVIVYGTEMLIRQGFEQYKNFTG 508
            D TP+ KH LK+Y L FDAIYTPK TRLLREA+ESGA IV G EM I Q +EQ++ FTG
Sbjct: 420 VDETPISKHALKYYSLVFDAIYTPKITRLLREAQESGATIVTGLEMFIGQAYEQFERFTG 479

Query: 509 LPAPEELFRQLM 520
           LPAP+ELF+Q +
Sbjct: 480 LPAPKELFKQFI 491


>GSVIVT01021977001 assembled CDS
          Length = 519

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/524 (47%), Positives = 351/524 (66%), Gaps = 13/524 (2%)

Query: 1   MSDLQLSNREVQSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQD 60
           M D+ +  +E     T++CTPLMG +V+QM+ +M KAK  GAD+VE+RLD + NF P QD
Sbjct: 1   MDDVGVLKKE-----TMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQD 55

Query: 61  LEILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSS 120
           LEI+++  PLP ++ YRP WEGGQYEGDE  R +AL LA +LGA+Y+D EL+VA DF   
Sbjct: 56  LEIILRNKPLPVMIVYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGK 115

Query: 121 IYGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRI 180
               +  + R IVS +    TP  E +   VA +Q+TGAD+IK+   A +IT+  +IF +
Sbjct: 116 QKMDQHSSSRTIVSCYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHL 175

Query: 181 MVHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRL 240
           + H Q+P+I   +G+RG +S++L  KFGG+L YG++E   ++  G PT++ L + Y  + 
Sbjct: 176 LSHCQMPLIAYSIGDRGFMSQILCRKFGGFLVYGSMEGSPVA--GLPTLESLREAYKVQY 233

Query: 241 IRPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASG 300
           I  DTKV+G+I KPVGHSK P+L N AF+ V  N +Y+  LVDD+++FF+ YSS DFA G
Sbjct: 234 INKDTKVFGLISKPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFA-G 292

Query: 301 CSCTIPHKEVALKCMDEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGLRE 359
            S  IP+KE      DE+ P+A+ IGA+N I+RRP DG L+ YNTD   +I+AIED LRE
Sbjct: 293 FSVGIPYKEAVTGFCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRE 352

Query: 360 L---NGAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKV 416
               NG  P   SPL GK FV++GAGGAG++LA+GA  +GA++V+ +  ++RA  LA  V
Sbjct: 353 RGLPNGEAPL-NSPLTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDFDRANSLAHAV 411

Query: 417 GGQAMTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTR 476
            G+     +  +F PE G +LAN T VGM PN D  P+ +  L  Y L FD++YTP+ TR
Sbjct: 412 SGEVKLYEDVANFQPEKGAILANATPVGMHPNTDRIPVAEETLSDYQLVFDSVYTPRKTR 471

Query: 477 LLREAKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLM 520
           LL+EA+ +GA+IV G EM +RQ   Q+  FTG  APEE  R+++
Sbjct: 472 LLKEAEAAGAIIVSGVEMFLRQAIGQFNLFTGGEAPEEFMREII 515