Jatropha Genome Database

JcCA0310141.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.30 + phase: 0 /TE/partial
         (390 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032526001 assembled CDS                                        65   5e-11
GSVIVT01020170001 assembled CDS                                        59   5e-09

>GSVIVT01032526001 assembled CDS
          Length = 287

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 95  LSLESEVWEMYFDGAS--NYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKG 152
           +S     W + FDGAS  N    G G + +   G  V    +     TNN AEY A I G
Sbjct: 141 MSSNCHSWLLQFDGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYRALILG 200

Query: 153 LEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPR 212
           ++ AL+  IK +R  GDS L+  Q    WK K + +    +   EL ++F      ++ R
Sbjct: 201 MKYALKKGIKRIRARGDSQLVCMQFQGLWKTKNQNMADLCEEAKELGKKFLSFQIEHVLR 260

Query: 213 AKNQFADALATLASMVNVGGDQV 235
             N  ADA A LA  VN+   QV
Sbjct: 261 EFNSEADAQANLA--VNLTNGQV 281


>GSVIVT01020170001 assembled CDS
          Length = 445

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 106 FDGASNYHGN----GVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEI 161
           FDGAS   GN    G   + ++  G  +    +     TNN AEY+A I GL+ AL+   
Sbjct: 295 FDGAS--KGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGY 352

Query: 162 KVLRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADAL 221
             +RV GDS L+  Q    WK + + +    +   +L  +F  +  +++ R  N  ADA 
Sbjct: 353 TSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQ 412

Query: 222 ATLASMVNVGGDQVIRPLT 240
           A LA  + VG  Q +  L 
Sbjct: 413 ANLAVHLAVGEVQEVHGLV 431