Jatropha Genome Database

JcCA0310141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.20 - phase: 2 /pseudo
         (329 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016051001 assembled CDS                                       349   1e-96

>GSVIVT01016051001 assembled CDS
          Length = 330

 Score =  349 bits (895), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 164/240 (68%), Positives = 189/240 (78%)

Query: 90  LQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQEQMKITEL 149
           LQELS WNA+Y +KFGF+FLICASGR+ +EILAELK+RY NRPIVEFEIAAQEQMK+TEL
Sbjct: 91  LQELSDWNARYWKKFGFVFLICASGRTASEILAELKRRYPNRPIVEFEIAAQEQMKVTEL 150

Query: 150 RLGKLFSTKINAASTGNQHSTSFGAKAEEDRVGIIGGHLTAALNFSSGKASQXXXXXXXX 209
           RL KLFST++ AAS   Q+  +   KA EDRV IIG HLTA    S+GK  Q        
Sbjct: 151 RLAKLFSTQVKAASISTQNPETAAKKAGEDRVSIIGAHLTATSEASAGKTPQISPRTRPP 210

Query: 210 XXXHVLDVSRGCPAGGVEVCLEMWNGTQPRPLFGEIGVDSWVVQGASTTDADGRCGQLMS 269
              HVLDV+RG PA G+EV LEMW G QPRPLFG+     WV++G+S TD DGR GQLMS
Sbjct: 211 ITTHVLDVARGSPAAGIEVRLEMWKGNQPRPLFGQEDEGGWVLEGSSITDKDGRSGQLMS 270

Query: 270 MVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPFSFTTYRGS 329
           M+D +NPGIY+ISFNTGKYCPSGFFPYVSI+FEI+E+Q  EHFHVPLL SPFSF+TYRGS
Sbjct: 271 MIDALNPGIYKISFNTGKYCPSGFFPYVSILFEIKESQKWEHFHVPLLLSPFSFSTYRGS 330