Jatropha Genome Database

JcCA0310141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.10 - phase: 0 /pseudo
         (142 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026762001 assembled CDS                                        92   8e-20
GSVIVT01005129001 assembled CDS                                        53   5e-08
GSVIVT01005132001 assembled CDS                                        52   9e-08
GSVIVT01031502001 assembled CDS                                        52   1e-07
GSVIVT01000907001 assembled CDS                                        50   2e-07
GSVIVT01011777001 assembled CDS                                        47   2e-06
GSVIVT01008573001 assembled CDS                                        47   2e-06
GSVIVT01038662001 assembled CDS                                        46   5e-06
GSVIVT01025734001 assembled CDS                                        46   6e-06

>GSVIVT01026762001 assembled CDS
          Length = 222

 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 61/78 (78%), Gaps = 2/78 (2%)

Query: 19 DEIITAVYRVNLHCEQCARDIKNPLMRTR-GVHNVDFDIDKSEIKVEGVIDVIKVHKQIE 77
          D + TAVY+VNLHC QCAR+I+ PL+R + G+H VD DI+  EI+V+G+I   K+ ++IE
Sbjct: 13 DAVTTAVYKVNLHCRQCAREIQKPLLRAQAGIHKVDADIEAGEIRVKGLIHTKKIQERIE 72

Query: 78 KFSQRKVELVT-QVKIKD 94
          K S++KVE+V+ Q KIKD
Sbjct: 73 KLSKKKVEIVSPQAKIKD 90


>GSVIVT01005129001 assembled CDS
          Length = 839

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 25  VYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEG-VIDVIKVHKQIEKFSQRK 83
           V +V++HCE CAR +   L   +GV +V  D   S++ V+G   D IKV ++I+K S RK
Sbjct: 38  VLKVDMHCEACARKVARALKGFQGVEDVTTDSKASKVVVKGKTADPIKVCERIQKKSGRK 97

Query: 84  VELVT 88
           VEL++
Sbjct: 98  VELIS 102


>GSVIVT01005132001 assembled CDS
          Length = 267

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 25  VYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEG-VIDVIKVHKQIEKFSQRK 83
           V +V++HCE CAR +   L   +GV +V  D   S++ V+G   D IKV ++I+K S RK
Sbjct: 38  VLKVDMHCEACARKVARALKGFQGVEDVTTDSKASKVVVKGKTADPIKVCERIQKKSGRK 97

Query: 84  VELVTQV 90
           VEL++ +
Sbjct: 98  VELISPL 104


>GSVIVT01031502001 assembled CDS
          Length = 313

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)

Query: 9   DMVSKEEKEADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVID 68
           D     +KE   +IT V +V+LHCE C   +   L    GV N   D D +++ V G +D
Sbjct: 17  DGNGGAKKEDSGLITVVLKVDLHCEGCGSKVVKYLKGLDGVANAKADSDTNKVTVIGKVD 76

Query: 69  VIKVHKQIEKFSQRKVELVTQVKIKD 94
              + +++E+ +++KVEL++    KD
Sbjct: 77  PSMLREKLEQKTKKKVELLSPAPKKD 102


>GSVIVT01000907001 assembled CDS
          Length = 288

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 13  KEEKEADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKV 72
           KE KE   ++  V +V +HCE CA +IK  +++ +GV  V+ D   S + V+GV D  K+
Sbjct: 73  KEAKEEPRVMIVVLKVYMHCENCAVEIKKAILKMKGVRTVEPDTKNSTVTVKGVFDPPKL 132


>GSVIVT01011777001 assembled CDS
          Length = 173

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 20 EIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVID-------VIKV 72
          +I T V +VN+HC+ C + +K  L R  GV+ V+ D ++  + V G +D       ++K 
Sbjct: 11 KIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYTVNIDAEQQRVTVSGSVDSGTLIKKLVKA 70

Query: 73 HKQIEKFSQR 82
           K  E +SQ+
Sbjct: 71 GKHAELWSQK 80


>GSVIVT01008573001 assembled CDS
          Length = 274

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%)

Query: 20  EIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKV 72
           ++IT V +V++HCE CA++I+  + R +GV   + D+  S++ V+GV D  K+
Sbjct: 140 QVITVVLKVHMHCEACAQEIQKRIGRMKGVEFAEPDLKASQVTVKGVFDPPKL 192


>GSVIVT01038662001 assembled CDS
          Length = 266

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 42/64 (65%)

Query: 28  VNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIEKFSQRKVELV 87
           V+LHC  CA+ I+  LM+ RGV  V  D+ ++++ ++G+++   V  +I K ++R+ +++
Sbjct: 50  VDLHCVGCAKKIERSLMKIRGVEEVMIDMAQNQVTIKGIVEPQAVCNRIMKKTKRRAKVL 109

Query: 88  TQVK 91
           + + 
Sbjct: 110 SPLP 113


>GSVIVT01025734001 assembled CDS
          Length = 345

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 52/80 (65%)

Query: 15  EKEADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHK 74
           EK+A+    AV++++LHCE CA+ ++  + +  GV +V  D   +++ V G  D +K+ +
Sbjct: 23  EKKAEGPAPAVFKIDLHCEGCAKKVRRYVRKFDGVEDVKVDSASNKVTVTGKADPVKLRE 82

Query: 75  QIEKFSQRKVELVTQVKIKD 94
           ++E+ ++++V L++ +  K+
Sbjct: 83  KLEEKTKKEVALISPIPKKE 102