Jatropha Genome Database

JcCA0310021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310021.10 + phase: 1 /partial
         (53 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028239001 assembled CDS                                        48   1e-06

>GSVIVT01028239001 assembled CDS
          Length = 141

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 28/33 (84%)

Query: 1   ASHQKLVMKAEEVMETQLNDAHRRITAVHKTAR 33
           ASHQKL+++ EE +E QLNDA +RITA+HK ++
Sbjct: 105 ASHQKLLLQVEEAIEIQLNDAQQRITAIHKASK 137