Jatropha Genome Database

JcCA0309961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309961.30 - phase: 2 /pseudo/partial
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019880001 assembled CDS                                        68   9e-13
GSVIVT01035921001 assembled CDS                                        64   1e-11
GSVIVT01012897001 assembled CDS                                        64   2e-11

>GSVIVT01019880001 assembled CDS
          Length = 291

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 43/46 (93%)

Query: 48  LQMDFSLDQPSVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           +QMDFSLDQ   DGHD+MGFGPL+PTESER+LMERVRQELKIELKQ
Sbjct: 156 MQMDFSLDQGGGDGHDMMGFGPLLPTESERTLMERVRQELKIELKQ 201


>GSVIVT01035921001 assembled CDS
          Length = 219

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 51  DFSLDQPSVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           D +L   S++G D MGFGPL+PTESERSLMERVRQELK ELKQ
Sbjct: 75  DANLFDGSLEGADSMGFGPLVPTESERSLMERVRQELKHELKQ 117


>GSVIVT01012897001 assembled CDS
          Length = 413

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 58  SVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           S+DG D MGFGPL+PTE+ERSLMERVRQELK ELKQ
Sbjct: 277 SLDGPDSMGFGPLVPTETERSLMERVRQELKHELKQ 312