Jatropha Genome Database

JcCA0309861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.20 - phase: 0 
         (519 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021977001 assembled CDS                                       768   0.0  
GSVIVT01021979001 assembled CDS                                       493   e-140
GSVIVT01017822001 assembled CDS                                       482   e-136
GSVIVT01021978001 assembled CDS                                       459   e-129

>GSVIVT01021977001 assembled CDS
          Length = 519

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/519 (71%), Positives = 427/519 (82%)

Query: 1   MGHVGLLNSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETIL 60
           M  VG+L    M+C PLM QSVEQMVRDM+ AK +GAD+VEVRLDYI NF P QDLE IL
Sbjct: 1   MDDVGVLKKETMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQDLEIIL 60

Query: 61  RKKPLPVIIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTH 120
           R KPLPV+IVYR K EGG +EGDEH+RLE L LA +LGADYID ELKVASD +G+ K   
Sbjct: 61  RNKPLPVMIVYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQ 120

Query: 121 QTDSKIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQ 180
            + S+ IVSCY+ G TPP E+L   V  +Q+ GAD+IKLV NA NITE+ +IF+LL H Q
Sbjct: 121 HSSSRTIVSCYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQ 180

Query: 181 VPLIAYSVGERGLISQILSPKFGGSLVYGSIEGNLIPGLPTLDSLREAYKVERINSDTKV 240
           +PLIAYS+G+RG +SQIL  KFGG LVYGS+EG+ + GLPTL+SLREAYKV+ IN DTKV
Sbjct: 181 MPLIAYSIGDRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYK 300
           FGLISKPVGHSKGPILHNP FRHVNYNGIYVPM VDDLKEFFS+YSSPD+AGFSVG PYK
Sbjct: 241 FGLISKPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYK 300

Query: 301 EAVVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRT 360
           EAV  FCDE+HPLA+SIGAVNTI+RRPSDGKLIGYNTDCEASITAIEDAL+E+G  NG  
Sbjct: 301 EAVTGFCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEA 360

Query: 361 SFSSSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKN 420
             +S L G+Q                 +SRGA+++IFD+DF+R  SLAHAVSGE + +++
Sbjct: 361 PLNSPLTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDFDRANSLAHAVSGEVKLYED 420

Query: 421 LVHFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAG 480
           + +F+PE  AILANATP+GMHPNT+RIPVAEETL  YQLVFD+VYTPRKTRLLKEAEAAG
Sbjct: 421 VANFQPEKGAILANATPVGMHPNTDRIPVAEETLSDYQLVFDSVYTPRKTRLLKEAEAAG 480

Query: 481 AIIVSGVEMFLRQAIGQFNLFTGREAPEDFMREIVLAKF 519
           AIIVSGVEMFLRQAIGQFNLFTG EAPE+FMREI+L+KF
Sbjct: 481 AIIVSGVEMFLRQAIGQFNLFTGGEAPEEFMREIILSKF 519


>GSVIVT01021979001 assembled CDS
          Length = 600

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/514 (46%), Positives = 339/514 (65%), Gaps = 5/514 (0%)

Query: 5   GLLNSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKP 64
           G   +S ++C P+MA SV+QM+  +  AK  G D+VE+RLDY+KNF P QDL+ ++++ P
Sbjct: 87  GARRNSTLICVPIMADSVDQMLGQIRKAKEVGGDLVEIRLDYLKNFSPRQDLQFLVKQSP 146

Query: 65  LPVIIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDS 124
           LP ++ YR   EGG ++GDE  RL+ LRLA ELGADYID+EL+VA + I  ++     + 
Sbjct: 147 LPTLVTYRPTWEGGQYDGDEGKRLDALRLAIELGADYIDVELQVAPEFINSIQGKTSGNV 206

Query: 125 KIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLI 184
           KIIVS +    +P  E L +LV  +QA GADI+K+ + A +IT+  RIF +L HSQVP I
Sbjct: 207 KIIVSSHNYQNSPSAEELGNLVARIQATGADIVKIATTALDITDCARIFQVLAHSQVPTI 266

Query: 185 AYSVGERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFG 242
             ++ ERGLIS+ILS KFG  L +GS+E  ++  PG PT+  L + Y   +I  DTKV G
Sbjct: 267 GIAMAERGLISRILSAKFGSYLTFGSLEAGVVSAPGQPTVKDLLDLYNFRQIGPDTKVHG 326

Query: 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYKEA 302
           +I KP+GHSK P L+N  F+ V +NGIY+P+ VD +K F + YSSPD+ G+S   P+KE 
Sbjct: 327 VIGKPIGHSKSPHLYNSAFKSVGFNGIYLPLLVDSVKNFLTTYSSPDFVGYSYTIPHKED 386

Query: 303 VVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRTSF 362
            +  CDE+ P+A++IGA++ ++RRP+DGKL+GYN D   +I AIE+ L+     NG TS 
Sbjct: 387 GLRCCDEIDPIAQAIGAISCMIRRPADGKLMGYNVDYLGAIAAIEEGLRAS---NGTTSV 443

Query: 363 SSSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLV 422
            S LAG+                  K +GAR+++ +  FE+ K LA  V GEA     L 
Sbjct: 444 GSPLAGKLFVVIGAGGAGKALAYGGKEKGARVVVANRTFEKAKELASKVGGEAMTLAELE 503

Query: 423 HFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAI 482
           +F PE   ILAN T +GM PN +  P++++ L  Y LVFDA+YTP+ TRLL+EA+ +GAI
Sbjct: 504 NFHPEDGMILANTTSVGMKPNIDNTPLSKKALSRYSLVFDAIYTPKLTRLLREAQESGAI 563

Query: 483 IVSGVEMFLRQAIGQFNLFTGREAPEDFMREIVL 516
           IV G EMF+ QA  QF  FTG  AP++ +RE+++
Sbjct: 564 IVYGTEMFINQAFVQFERFTGLPAPKELIREVLV 597


>GSVIVT01017822001 assembled CDS
          Length = 495

 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/493 (49%), Positives = 328/493 (66%), Gaps = 4/493 (0%)

Query: 25  MVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKPLPVIIVYRSKCEGGLFEGDE 84
           MV DM  AK+ GAD+VEVRLD +K F P QDLE ++RK PLP +  YR K EGG +EGDE
Sbjct: 1   MVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRKCPLPTLFTYRPKWEGGQYEGDE 60

Query: 85  HTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDSKIIVSCYLTGATPPKENLSH 144
           ++R + LRLA ELGADY+D+ELKVA + I  +        K+IVS +    TP  E+L +
Sbjct: 61  NSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPEKFKVIVSSHNYQNTPSVEDLGN 120

Query: 145 LVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLIAYSVGERGLISQILSPKFGG 204
           LV S+QA GADI+K+ + A  IT++ RIF + +HSQVP+I   +GERGLIS+IL PKF G
Sbjct: 121 LVVSIQATGADIVKIATTALEITDVARIFQITVHSQVPVIGLVMGERGLISRILCPKFSG 180

Query: 205 SLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFGLISKPVGHSKGPILHNPTFR 262
            L +GS+E  ++  PG PT+  L   Y   ++  DTKVFG+I KPV HSK P L+N  F+
Sbjct: 181 YLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPDTKVFGVIGKPVSHSKSPHLYNEAFK 240

Query: 263 HVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYKEAVVEFCDEVHPLAKSIGAVNT 322
            V +NG+YV + VDD+ +FF  YS+ D+AGFS   P+KEA ++ CDEV P+AKSIGAVN 
Sbjct: 241 SVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTIPHKEAALKCCDEVSPVAKSIGAVNC 300

Query: 323 IVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRTSFSSSLAGRQXXXXXXXXXXXX 382
           I+RRPSDGKL GYNTD   +I+AIED L++   I+  ++  S LAG+             
Sbjct: 301 IIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKIS--STSGSPLAGKLFVVIGAGGAGKA 358

Query: 383 XXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLVHFRPETDAILANATPLGMHP 442
                K +GAR++I +  + R + LA AV G+A    +L +F PE   ILAN T +GM P
Sbjct: 359 LAYGAKEKGARVVIANRTYARARELADAVGGDALSLADLNNFHPENGMILANTTSIGMQP 418

Query: 443 NTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAIIVSGVEMFLRQAIGQFNLFT 502
             +  P+++  L  Y LVFDA+YTP+ TRLL+EA+ +GA IV+G+EMF+ QA  QF  FT
Sbjct: 419 KVDETPISKHALKYYSLVFDAIYTPKITRLLREAQESGATIVTGLEMFIGQAYEQFERFT 478

Query: 503 GREAPEDFMREIV 515
           G  AP++  ++ +
Sbjct: 479 GLPAPKELFKQFI 491


>GSVIVT01021978001 assembled CDS
          Length = 531

 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/515 (45%), Positives = 328/515 (63%), Gaps = 8/515 (1%)

Query: 5   GLLNSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKKP 64
           G+ ++  ++C PLM  +VEQM+ +M  AK  GAD+VE+RLD ++NF P QDL+ ++++ P
Sbjct: 17  GVRSNPTLLCTPLMGTTVEQMLTEMRKAKEIGADIVEIRLDCLRNFSPAQDLQILIKQSP 76

Query: 65  LPVIIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDS 124
           LP ++ YR   EGG +EGDE+ R + LRLA ELGA YID+EL+VA +    +      + 
Sbjct: 77  LPTLVTYRPIWEGGQYEGDENKRQDALRLAMELGASYIDVELEVAHEFNNSIYGKKPQNF 136

Query: 125 KIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLI 184
           K+IVS +    TP  E + +LV  +QA+GADI+K+ + A +IT++ R+  + +HSQVP I
Sbjct: 137 KVIVSSHNFHNTPSTEAIGNLVARIQASGADIVKIATTALDITDVARVLQVTVHSQVPTI 196

Query: 185 AYSVGERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFG 242
           A  +GERGLIS++LSPKFGG L YG++E   I  PG PT   L + Y    I  DTKV+G
Sbjct: 197 AIVMGERGLISRLLSPKFGGYLTYGALEAGAISAPGQPTAKDLLDLYNFRLIKPDTKVYG 256

Query: 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDY-AGFSVGFPYKE 301
           +I KPVGHSK P+L N  F+ V  N +YV + VDD+++FF+ YS+PD+ +G S   P+KE
Sbjct: 257 IIGKPVGHSKSPLLFNAAFKKVGLNAVYVHLLVDDVEKFFNTYSAPDFISGCSCTIPHKE 316

Query: 302 AVVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRT- 360
             ++  D + P+A+ IGA+N IVR+P DGKL  +NTD   +I AIED L+E    NG + 
Sbjct: 317 VAIKCMDTIDPIARKIGAINNIVRKP-DGKLTAFNTDYIGAIEAIEDGLRES---NGSSP 372

Query: 361 SFSSSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKN 420
           +  S LAG+                  K +GAR+++ +  FER K LA  V G+A     
Sbjct: 373 AVGSPLAGKLFVVLGAGGAGKSLAYGAKEKGARVVVANRTFERAKDLADKVGGQALTLAE 432

Query: 421 LVHFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAG 480
           + +F PE   ILAN T +GM P     P+ +  L  Y LVFDA+YTP+ TRLL+EA+ +G
Sbjct: 433 IENFHPEEGMILANTTSVGMKPKINDTPIPKHALKHYSLVFDAIYTPKDTRLLREAKESG 492

Query: 481 AIIVSGVEMFLRQAIGQFNLFTGREAPEDFMREIV 515
            IIV G EM +RQ   Q+  FTG  APE+  RE++
Sbjct: 493 KIIVYGTEMLIRQGFEQYKNFTGLPAPEELFRELM 527