Jatropha Genome Database

JcCA0309861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.10 + phase: 0 
         (214 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008137001 assembled CDS                                        62   2e-10

>GSVIVT01008137001 assembled CDS
          Length = 552

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 22  NRKEGKFQHLPDSIIVEILSRLPSEQLSNCQLVCRKFRDLTSTPYFREIHSVK---RASP 78
            +K+G    L   +I EILSRLP E +  C+ VC+ +  +  +P F  + + K   + S 
Sbjct: 145 TKKDGPVNDLLPELISEILSRLPIELILRCRSVCKTWNSVIQSPLFINLQARKSHNQPSR 204

Query: 79  IVLVQYFNPGIHDKDMQVYLLDEKTKDENQKLNCTGRFFMYCLILCSCNGLILFDSRCKL 138
           ++L   F  G+    M    L +  + ++++++     F    I+ SCNGL+   S  +L
Sbjct: 205 VILKPIFG-GVTATTMHSLFLLDTEERKSRRIHDKSWRFSGLQIMSSCNGLLCITSDSEL 263

Query: 139 C---INNPLTAELIFLKNPYQSGGFG-----CGFYFHTSEKEY 173
               I+NP+T E + L +P    GF       G  F +S  +Y
Sbjct: 264 GPVYISNPITREFVILPSP--ETGFSLLRHQVGLGFDSSNGKY 304