Jatropha Genome Database

JcCA0309351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309351.30 + phase: 0 /partial/short
         (43 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000974001 assembled CDS                                        76   4e-15
GSVIVT01010721001 assembled CDS                                        74   1e-14
GSVIVT01023806001 assembled CDS                                        70   2e-13

>GSVIVT01000974001 assembled CDS
          Length = 151

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/37 (97%), Positives = 37/37 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 42
           RINGSLARRAIKDLMARGSIRM+SAHASQQIYTRATN
Sbjct: 114 RINGSLARRAIKDLMARGSIRMVSAHASQQIYTRATN 150


>GSVIVT01010721001 assembled CDS
          Length = 151

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/37 (94%), Positives = 37/37 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 42
           R+NGSLAR+AIKDLMARGSIRMISAHASQQIYTRATN
Sbjct: 114 RVNGSLARQAIKDLMARGSIRMISAHASQQIYTRATN 150


>GSVIVT01023806001 assembled CDS
          Length = 257

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 42
           RINGSLARRAIK+LMARG IRM+S+H+SQQIYTRATN
Sbjct: 218 RINGSLARRAIKELMARGLIRMVSSHSSQQIYTRATN 254