Jatropha Genome Database

JcCA0309311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309311.20 - phase: 0 
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024954001 assembled CDS                                        74   9e-15
GSVIVT01025031001 assembled CDS                                        59   4e-10

>GSVIVT01024954001 assembled CDS
          Length = 135

 Score = 74.3 bits (181), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 19/112 (16%)

Query: 4   YYIEPTTGRKFRSKREVQYYLETGTLKKRKKGAESSEADVNPPENSGSQXXXXXXXXXXG 63
           Y+IEP TGR+FRSK+EV+YYLETG ++K+ K           P+NS  +           
Sbjct: 33  YFIEPITGRRFRSKKEVRYYLETGEVRKKPKKN---------PDNSPEKGTKSPP----- 78

Query: 64  SIMKFDYLNVPDKIEWALTVANEDAWTPFTGGSKVPEYERQSW--EFEMMHF 113
             + F++ +VPD ++W  T ++E  WTPF  G +VPE  ++ W   FE +  
Sbjct: 79  --LNFNFEDVPDTVKWVRTGSSE-GWTPFINGQEVPESSKRDWAAAFEFLAL 127


>GSVIVT01025031001 assembled CDS
          Length = 212

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 4   YYIEPTTGRKFRSKREVQYYLETGTLKKRKKGAESSEADVNPPENSGSQXXXXXXXXXXG 63
           YY EP TGR+FRS + VQ +L            E+++    P +NS +            
Sbjct: 111 YYYEPGTGRQFRSLKSVQRHL-----------IEANDCTHKPSQNSDASKKNNSSTKVKT 159

Query: 64  SIMKFDYLNVPDKIEWALTVANEDAWTPFTGGSKVPEYERQSW-EFEMMHFH 114
           S   F  +  P K+ W LT    D W+P+   S VPE  +Q+W +  M+H +
Sbjct: 160 STSHF--IKPPKKVNWVLTGPGGDVWSPYINASAVPESIKQTWAKIFMLHVN 209