Jatropha Genome Database

JcCA0309311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309311.10 - phase: 0 /partial
         (88 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024952001 assembled CDS                                        97   2e-21
GSVIVT01016559001 assembled CDS                                        95   8e-21
GSVIVT01024086001 assembled CDS                                        63   2e-11

>GSVIVT01024952001 assembled CDS
          Length = 254

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 50/79 (63%)

Query: 1  MGRKFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDF 60
          MGRKFF+GGNWKCNGT EEVKKIVT LNEA                          R DF
Sbjct: 1  MGRKFFIGGNWKCNGTVEEVKKIVTVLNEAEVPSEDIVEVVVSPPFVFLPLVKSLLRSDF 60

Query: 61 QVAAQNCWVRKGGAFTGEV 79
          QVAAQNCW+R+GGAFTGE+
Sbjct: 61 QVAAQNCWIRRGGAFTGEI 79


>GSVIVT01016559001 assembled CDS
          Length = 254

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 49/80 (61%)

Query: 1  MGRKFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDF 60
          MGRKFFVGGNWKCNGT EEVKKIV+TLN                            RPDF
Sbjct: 1  MGRKFFVGGNWKCNGTGEEVKKIVSTLNAGEVPSGDVVEVVVSPPFVFLPLVKSTLRPDF 60

Query: 61 QVAAQNCWVRKGGAFTGEVR 80
           VAAQNCWV+KGGAFTGE+ 
Sbjct: 61 HVAAQNCWVKKGGAFTGEIS 80


>GSVIVT01024086001 assembled CDS
          Length = 256

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 4  KFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDFQVA 63
          KFFVGGNWKCNGT + + K+V+ LN A                          R   +++
Sbjct: 6  KFFVGGNWKCNGTKDSISKLVSDLNSAKLEADVDVVVAPPFVYLDQVKNSLTDR--IEIS 63

Query: 64 AQNCWVRKGGAFTGEVR 80
          AQN WV KGGAFTGE+ 
Sbjct: 64 AQNSWVGKGGAFTGEIS 80