Jatropha Genome Database

JcCA0309221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.20 + phase: 0 /partial
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000017001 assembled CDS                                       109   7e-25

>GSVIVT01000017001 assembled CDS
          Length = 438

 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 76/109 (69%)

Query: 70  KSAKNTSSSVKDNCSINNASCRFIAHSTITFTSSPDVKGGCLYGSNLSQKPPRKYKGVQV 129
           KSAKN  +S  ++ S  N +C FIAH+ I F SSPDVK GCLYG +L + P  ++KGVQV
Sbjct: 68  KSAKNRGNSKSNSSSSGNQNCNFIAHTAINFNSSPDVKSGCLYGGSLIRTPASRFKGVQV 127

Query: 130 FTYKELEVATERFSEAXXXXXXXXXXXXXXXLADGTVAAVKMLRREGKQ 178
           FTYKELE+AT++FSEA               L+DGTVAA+K+LRR+GKQ
Sbjct: 128 FTYKELEMATDKFSEANVIGNGGFGVVYRGVLSDGTVAAIKVLRRDGKQ 176