Jatropha Genome Database

JcCA0309221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.10 + phase: 0 /pseudo
         (181 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006266001 assembled CDS                                       236   5e-63
GSVIVT01000019001 assembled CDS                                       205   9e-54

>GSVIVT01006266001 assembled CDS
          Length = 178

 Score =  236 bits (602), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 140/184 (76%), Gaps = 10/184 (5%)

Query: 1   MGDGEATVDQKKRIVFVTVGTNTIRCSCESGGYKGS*TKNCLEE----GILISLFKMGRG 56
           MGD +  + + +R VFVTVGT     +C     K   T+   +E    G    L +MGRG
Sbjct: 1   MGDSDDGI-KSERTVFVTVGT-----TCFDALVKAVDTQEFKKELSARGYTHLLIQMGRG 54

Query: 57  SYTPTKSEGEDGSVAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRLHKPLIVVVNE 116
           SY P KS GEDGS+ VDYF FSSSIAD+LRSASLVISHAGSGSIFETLRL KPLIVVVNE
Sbjct: 55  SYFPKKSTGEDGSLVVDYFIFSSSIADNLRSASLVISHAGSGSIFETLRLRKPLIVVVNE 114

Query: 117 DLMDNHQTELAEELAERKHLYCARPQTIHHTIADMDLESLLPYPAGDATPVAKLINRFLG 176
           DLMDNHQ+ELAEELAERKHL+CA PQT+  T+A M+LESLLPY  GDA PVAKLINRFLG
Sbjct: 115 DLMDNHQSELAEELAERKHLFCAHPQTLFQTVASMNLESLLPYHPGDAAPVAKLINRFLG 174

Query: 177 FPDD 180
           FPDD
Sbjct: 175 FPDD 178


>GSVIVT01000019001 assembled CDS
          Length = 169

 Score =  205 bits (522), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/163 (66%), Positives = 123/163 (75%), Gaps = 10/163 (6%)

Query: 1   MGDGEATVDQKKRIVFVTVGTNTIRCSCESGGYKGS*T----KNCLEEGILISLFKMGRG 56
           MGD +  + +  R VFVTVGT     +C     K   T    +     G    L +MGRG
Sbjct: 1   MGDTDDYI-KPVRTVFVTVGT-----TCFDALVKAVDTHEFKRELFARGYTHLLIQMGRG 54

Query: 57  SYTPTKSEGEDGSVAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRLHKPLIVVVNE 116
           SY PTKS GEDGS+ VD+FTFSSSIAD+LRSASLVISHAGSGSIFETLRL KPLIVVVNE
Sbjct: 55  SYIPTKSTGEDGSLVVDFFTFSSSIADNLRSASLVISHAGSGSIFETLRLRKPLIVVVNE 114

Query: 117 DLMDNHQTELAEELAERKHLYCARPQTIHHTIADMDLESLLPY 159
           DLMDNHQ+ELAEELAERKHL+CARPQT++ TIA M+LESLLPY
Sbjct: 115 DLMDNHQSELAEELAERKHLFCARPQTLYQTIATMNLESLLPY 157