Jatropha Genome Database

JcCA0309141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309141.10 - phase: 0 /pseudo/partial
         (233 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003837001 assembled CDS                                       157   4e-39
GSVIVT01023949001 assembled CDS                                       149   1e-36
GSVIVT01025704001 assembled CDS                                       103   8e-23
GSVIVT01023010001 assembled CDS                                        56   1e-08

>GSVIVT01003837001 assembled CDS
          Length = 308

 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 76/88 (86%)

Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
           LNNRKKVTAVHKANIMKLADGLFLESCREV++KYPGIKY+EIIVDNCCMQLVSKPEQFDV
Sbjct: 131 LNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYSEIIVDNCCMQLVSKPEQFDV 190

Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
           MVTPNLYGNLV            VMPGG
Sbjct: 191 MVTPNLYGNLVANTAAGIAGGTGVMPGG 218


>GSVIVT01023949001 assembled CDS
          Length = 308

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 72/88 (81%)

Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
           LNNRKKVTAVHKANIMKLADGLFLESCREV+  YP I Y+EIIVDNCCMQLVSKPEQFDV
Sbjct: 131 LNNRKKVTAVHKANIMKLADGLFLESCREVAKNYPSIAYSEIIVDNCCMQLVSKPEQFDV 190

Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
           MVTPNLYGNLV            VMPGG
Sbjct: 191 MVTPNLYGNLVANTAAGIAGGTGVMPGG 218


>GSVIVT01025704001 assembled CDS
          Length = 366

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 118 NNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVM 177
           + R++V+A+HKANIM+  DGLFL+ CREV+ KYP IKY E+++DNCCM LV  P  FDV+
Sbjct: 194 HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCCMMLVKNPALFDVL 253

Query: 178 VTPNLYGNLV 187
           V PNLYG+++
Sbjct: 254 VMPNLYGDII 263


>GSVIVT01023010001 assembled CDS
          Length = 506

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 120 RKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVT 179
           R K+ +V KAN+++ A  L+ +    ++S+YP ++ + + VDN  MQLV  P+QFD +VT
Sbjct: 325 RGKLCSVDKANVLE-ASMLWRKRVTAMASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVT 383

Query: 180 PNLYGNLV 187
            N++G+++
Sbjct: 384 NNIFGDIL 391