Jatropha Genome Database

JcCA0309091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309091.20 + phase: 1 /TE
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031724001 assembled CDS                                        59   8e-10
GSVIVT01000641001 assembled CDS                                        49   7e-07

>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%)

Query: 1    LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
            LL+ AGL     V +P+  G  L    G                   ++T P+I++ + +
Sbjct: 954  LLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAYTINK 1013

Query: 61   VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC 112
              QF+  P   HLQA   +LRYL+G+   GL F  SS   + AY +AD A+C
Sbjct: 1014 FFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASC 1065


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 48  SMTGPNISFGVQQVSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNA 107
           + T P+I   V  +S++++NP E H  AA  + RYL+GT + GLF+       +  + ++
Sbjct: 247 TATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDS 306

Query: 108 DXATCTVTPLVSQCVLYLLAQGSISKS 134
           D A        +   +++L  G++S S
Sbjct: 307 DYAGDQDNRRSTSGYVFMLGTGAVSWS 333