Jatropha Genome Database

JcCA0309051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309051.10 + phase: 0 
         (225 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015513001 assembled CDS                                       182   9e-47
GSVIVT01015514001 assembled CDS                                       176   6e-45
GSVIVT01001426001 assembled CDS                                        92   3e-19
GSVIVT01036594001 assembled CDS                                        88   3e-18

>GSVIVT01015513001 assembled CDS
          Length = 308

 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 102/113 (90%)

Query: 111 ELQAIKYLSAAGFGAKLLGTYGNGMVQSFINARTLTPADMRKPKLAAEIARQLHEFHKVE 170
           EL AI YLSAAGFGAKLLG +GNGMVQSFINARTLTP+DM+ PKLAAEIA+QL +FH+VE
Sbjct: 40  ELHAIGYLSAAGFGAKLLGVFGNGMVQSFINARTLTPSDMKMPKLAAEIAKQLRKFHQVE 99

Query: 171 IPGSKEPQLWNEIFKFYENASILQFDDIEKQRIYETISFKEVYNEIVEIKVLS 223
           IPGSKEPQLW +IFKF+E AS L+FDDIEKQ+ Y+ ISF+EV+NE+VE+K L+
Sbjct: 100 IPGSKEPQLWIDIFKFFEKASTLKFDDIEKQKKYKEISFEEVHNEVVELKELT 152


>GSVIVT01015514001 assembled CDS
          Length = 125

 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 97/118 (82%), Gaps = 2/118 (1%)

Query: 1   MGAAEQKSWDGMEVAEEARGNCTSDILSSNLTVDCSLSLPQMAPRVVELCKDLFKKWSKL 60
           MGA   K WD MEVAEEAR NC S+I SS+ TVD SLS PQM P+++ELCKDLFKKWS L
Sbjct: 1   MGAV--KIWDAMEVAEEARENCCSEIHSSHTTVDTSLSFPQMTPKIIELCKDLFKKWSNL 58

Query: 61  DDSLFSVERVSGGITNLLLKVTVKEEDGNEVSVTVRIYGPNTDYVIHRERELQAIKYL 118
           DDS FSVE +SGGITNLLLKV+VKEE+GN   +TVR+YGPNT+YVI+RERELQ   +L
Sbjct: 59  DDSQFSVETISGGITNLLLKVSVKEENGNSTCMTVRLYGPNTEYVINRERELQCTIFL 116


>GSVIVT01001426001 assembled CDS
          Length = 358

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 70  VSGGITNLLLKVTVKEEDGNEVSVTVRIYGPNTDYVIHRERELQAIKYLSAAGFGAKLLG 129
           + G +TN + ++    E G   SV VR+YG   +    R+ E++  + +S  G G +LLG
Sbjct: 43  LKGAMTNEIYQINWPIEAGTR-SVLVRVYGEGVEVFFDRDDEIRTFECMSEHGHGPRLLG 101

Query: 130 TYGNGMVQSFINARTLTPADMRKPKLAAEIARQLHEFHKVEIPGSKEPQLWNEI 183
            + +G V+ FI+A+TL+ AD+R P+++A +A +L EFH++E+PG K   LW+ +
Sbjct: 102 RFADGRVEEFIHAKTLSAADLRDPEISALVAAKLREFHRLEMPGPKNVFLWDRM 155


>GSVIVT01036594001 assembled CDS
          Length = 463

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 39  LPQMAPRVVELCKDLFKKWSKLDDS-LFSVERVSGGITNLLLKVTVKEEDG-NEVSVTVR 96
           LP  A R++     L   W  + DS    V  + G +TN + ++      G     V VR
Sbjct: 115 LPGEARRIL---LSLASSWDNVTDSNALQVIPLKGAMTNEVYQIKWPTSTGETSRKVLVR 171

Query: 97  IYGPNTDYVIHRERELQAIKYLSAAGFGAKLLGTYGNGMVQSFINARTLTPADMRKPKLA 156
           IYG   +    R  E+Q  +++S  G G +LLG + NG ++ FI+ARTL+ AD+  P ++
Sbjct: 172 IYGEGVEVFFDRASEIQTFEFISKHGQGPRLLGRFPNGRIEEFIHARTLSAADLHDPDIS 231

Query: 157 AEIARQLHEFHKVEIPGSKEPQLWNEIFKFY---------ENASILQFDDIEKQ 201
             IA ++ EFH + +PG K+  LW+ +  +          E A+  Q D IE++
Sbjct: 232 DLIAIKMKEFHDLNMPGPKDVVLWDRMRDWLSAAKNLSSPEEANTFQLDAIEEE 285