Jatropha Genome Database

JcCA0308991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308991.10 - phase: 0 /partial
         (211 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022280001 assembled CDS                                       309   7e-85
GSVIVT01015373001 assembled CDS                                       257   3e-69
GSVIVT01009698001 assembled CDS                                       234   2e-62

>GSVIVT01022280001 assembled CDS
          Length = 255

 Score =  309 bits (791), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/226 (69%), Positives = 172/226 (76%), Gaps = 16/226 (7%)

Query: 1   MPEEKEESTSIPLSH-AENGGEEPEDPAKXXXXXXXXXTRE--------------MTGCV 45
           M EEKE STS+PLS    NGGE+PEDP K         TR+              MTGCV
Sbjct: 1   MAEEKE-STSVPLSQTGGNGGEDPEDPEKTPPASPNSSTRKACCYFLQSWVSKKFMTGCV 59

Query: 46  VLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXXWIGSN 105
           VLFP+AVTFF+TWW IQFVDGFFSP+YERLGIDI                     W+G+ 
Sbjct: 60  VLFPVAVTFFVTWWFIQFVDGFFSPLYERLGIDIFGLGFVTSLLFVFFVGVFVSSWMGAT 119

Query: 106 VFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFGFITST 165
           VFWLGEWFIKRMPFV+H+YSASKQISAAISP QNTTAFKEVAIIRHPR+GEYAFGFITST
Sbjct: 120 VFWLGEWFIKRMPFVKHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 179

Query: 166 VILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           VILQ++NEDEELCSVFVPTNHLYIGDIFLVNSK+IIRPNLSIREGI
Sbjct: 180 VILQKENEDEELCSVFVPTNHLYIGDIFLVNSKEIIRPNLSIREGI 225


>GSVIVT01015373001 assembled CDS
          Length = 266

 Score =  257 bits (656), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 137/171 (80%)

Query: 41  MTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXX 100
           MTGCV+LFPIA+TF+ITWW I FVDGFFSPIY +LGI+I                     
Sbjct: 64  MTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFITSITFIFLVGVFMSS 123

Query: 101 WIGSNVFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFG 160
           W+G++V  LGEWFIKRMPFVRH+YSASKQISAAISP QNT AFKEVAIIRHPRIGEYAFG
Sbjct: 124 WLGASVLGLGEWFIKRMPFVRHIYSASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFG 183

Query: 161 FITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           FITS+V+LQ    +EELC V+VPTNHLYIGDIFLVN KD+IRPNLS+REGI
Sbjct: 184 FITSSVVLQSYTGEEELCCVYVPTNHLYIGDIFLVNCKDVIRPNLSVREGI 234


>GSVIVT01009698001 assembled CDS
          Length = 264

 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 134/171 (78%)

Query: 41  MTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXX 100
           M+GCV+L PIA+TF+ITW    FVDGFFSP+Y +LGI++                     
Sbjct: 59  MSGCVILLPIAITFYITWGFFHFVDGFFSPVYNQLGINVFGLGFITSITFIFLVGVFMSS 118

Query: 101 WIGSNVFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFG 160
           W+G+++  LGEWFIK+MP V ++YSASKQISAAISP Q++ AFKEVAIIRHPRIGEYAFG
Sbjct: 119 WLGASLLGLGEWFIKKMPLVSYIYSASKQISAAISPDQSSNAFKEVAIIRHPRIGEYAFG 178

Query: 161 FITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           FIT+TV+LQR+  +EELC ++VP+NHLYIGD+FL++S DI+RPNLS+REGI
Sbjct: 179 FITNTVLLQRNTGEEELCCIYVPSNHLYIGDVFLISSMDILRPNLSVREGI 229