Jatropha Genome Database

JcCA0308971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308971.10 + phase: 2 /partial
         (377 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011700001 assembled CDS                                       693   0.0  
GSVIVT01018452001 assembled CDS                                       455   e-128

>GSVIVT01011700001 assembled CDS
          Length = 583

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/377 (88%), Positives = 349/377 (92%)

Query: 1   SIFDFESIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQGSSLLNCVPKEDFGGGH 60
           SIFDF+SI+KLLSSPKFTFCYDALHGV GAYAKRIFVEELGAQ SSLLNCVPKEDFGGGH
Sbjct: 207 SIFDFQSIQKLLSSPKFTFCYDALHGVGGAYAKRIFVEELGAQESSLLNCVPKEDFGGGH 266

Query: 61  PDPNLTYAKELVARMGLGKSNSEVEPPEFGAAADGDADRNMILGKRFFVTPSDSXXXXXX 120
           PDPNLTYAKELVA MGLGKS+++ EPPEFGAA+DGDADRNMILGKRFFVTPSDS      
Sbjct: 267 PDPNLTYAKELVACMGLGKSDAKNEPPEFGAASDGDADRNMILGKRFFVTPSDSVAIIAA 326

Query: 121 XXXXXXPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCG 180
                 PYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCS+CG
Sbjct: 327 NAVDAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSICG 386

Query: 181 EESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLNGGKLVTVEDIVRNHWAFYGRHYYT 240
           EESFGTGSDHIREKDGIWAVLAWLSILA++NKENL G KLVTVE+IVRNHWA YGRHYYT
Sbjct: 387 EESFGTGSDHIREKDGIWAVLAWLSILAYENKENLGGAKLVTVEEIVRNHWATYGRHYYT 446

Query: 241 RYDYENVDASAAKELMAHLVNLQSSLGEVNKIVKGVRSDVSNVVHADEFEYKDPVDGSIS 300
           RYDYENVDA AAKELMA+LV LQSSL EVNKI+KG+ SDVSNV  ADEFEYKDPVDGSIS
Sbjct: 447 RYDYENVDAGAAKELMAYLVKLQSSLPEVNKIIKGIHSDVSNVAKADEFEYKDPVDGSIS 506

Query: 301 SHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVDVALK 360
            HQGIRY+FEDGSRL+FRLSGTGSEGATIR+YIEQYEKD SKTGRDSQEAL PLV+VALK
Sbjct: 507 KHQGIRYMFEDGSRLIFRLSGTGSEGATIRVYIEQYEKDSSKTGRDSQEALGPLVEVALK 566

Query: 361 LSKMQEFTGRSAPTVIT 377
           LSKMQEFTGRSAPTVIT
Sbjct: 567 LSKMQEFTGRSAPTVIT 583


>GSVIVT01018452001 assembled CDS
          Length = 614

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/377 (58%), Positives = 278/377 (73%), Gaps = 12/377 (3%)

Query: 1   SIFDFESIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQGSSLLNCVPKEDFGGGH 60
           ++FDF+ I+ LLS   F F +DA+H V GAYAK IFV++LGA   S+ N VP EDFG GH
Sbjct: 250 NVFDFQLIKGLLSRSDFRFTFDAMHAVTGAYAKPIFVDKLGASPDSISNGVPLEDFGHGH 309

Query: 61  PDPNLTYAKELVARMGLGKSNSEVEPPEFGAAADGDADRNMILGKRFFVTPSDSXXXXXX 120
           PDPNLTYAK+LV  M        V  P+FGAA+DGD DRNMILG+ FFVTPSDS      
Sbjct: 310 PDPNLTYAKDLVNIM------YGVNGPDFGAASDGDGDRNMILGRSFFVTPSDSVAIIAA 363

Query: 121 XXXXXXPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCG 180
                 PYF +G KG+ARSMPTS ALD VA+ L L FFEVPTGWKFFGNLMDAG  S+CG
Sbjct: 364 NAQEAIPYFQSGPKGLARSMPTSGALDRVAEKLTLPFFEVPTGWKFFGNLMDAGKLSICG 423

Query: 181 EESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLNGGKLVTVEDIVRNHWAFYGRHYYT 240
           EESFGTGSDHIREKDGIWAVLAWLSI+A++NK+   G KL +V D+V+ HWA YGR++++
Sbjct: 424 EESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLASVADVVKEHWATYGRNFFS 483

Query: 241 RYDYENVDASAAKELMAHLVNLQSSLGEVNKIVKGVRSDVSNVVHADEFEYKDPVDGSIS 300
           RYDYE  ++  A +++ +L +L      V+K   G +     +  AD+F Y DPVDGS++
Sbjct: 484 RYDYEECESEGANKMIEYLRDL------VSKSKAGEKYGNYALQFADDFSYTDPVDGSVA 537

Query: 301 SHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVDVALK 360
           S QG+R++F DGSR+++RLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL 
Sbjct: 538 SKQGVRFVFTDGSRIIYRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQAALKPLIDLALS 597

Query: 361 LSKMQEFTGRSAPTVIT 377
           LSK+++FTGR  PTVIT
Sbjct: 598 LSKLKDFTGREKPTVIT 614