Jatropha Genome Database

JcCA0308941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308941.10 + phase: 0 /TE/partial
         (662 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023325001 assembled CDS                                        62   9e-10

>GSVIVT01023325001 assembled CDS
          Length = 1235

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 15/138 (10%)

Query: 484 KSFHVENFWQAWHTLSSLQISCRSYLQPGKTGP---------TKDARN-DLKSSSN-NCK 532
           +S  VE   +AW  LSSL++S R+Y +PGK  P          +D R  +L+SS N N +
Sbjct: 52  QSLQVE---KAWGALSSLKLSSRNYSKPGKMAPLLKDASVEFPRDVRKCNLQSSHNTNNQ 108

Query: 533 YSERTLVHQNFSESRVKNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKASGANNTLSR 592
           Y E  L HQN  E+    +E+    GNSF   +A  AE     G Q E K S   N+  +
Sbjct: 109 YLEHNLPHQNLGETNSSYSETASCRGNSFRSGSA-CAENAGREGGQNETKPSMLYNSHIQ 167

Query: 593 DFAGSFNNHNIHTNQNRE 610
               S    N+HT Q +E
Sbjct: 168 VVGQSSGTCNVHTGQVKE 185