Jatropha Genome Database

JcCA0308861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308861.20 - phase: 0 
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028462001 assembled CDS                                       219   4e-58

>GSVIVT01028462001 assembled CDS
          Length = 220

 Score =  219 bits (557), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/130 (80%), Positives = 118/130 (90%)

Query: 1   MENDEIMGGDKLILRGLKFHGFHGVKPEERTLGQKFLIDVDAWMDLREAGKTDRLSDTIS 60
           +++ EIM GDKLILRGL+FHGFHGVKPEER LGQKFL+DVDAWMDLR AG++D LSDTIS
Sbjct: 88  VDSGEIMKGDKLILRGLRFHGFHGVKPEERKLGQKFLVDVDAWMDLRAAGRSDCLSDTIS 147

Query: 61  YTEIYRIVKEVVEGAPHNLLESVAHKIASTTLTKYPQISAVRVKVGKPHVAVHGPLDYLG 120
           YT+IYRIVKE+VEG P NLLESVA  IASTTLTK+ +ISA+RVKVGKPHVAV GP+DYLG
Sbjct: 148 YTDIYRIVKEIVEGPPQNLLESVAQLIASTTLTKHSRISAIRVKVGKPHVAVQGPVDYLG 207

Query: 121 VEILRRRSID 130
           VEILR RS+D
Sbjct: 208 VEILRYRSVD 217