Jatropha Genome Database

JcCA0308861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308861.10 + phase: 0 /partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022501001 assembled CDS                                       300   2e-82

>GSVIVT01022501001 assembled CDS
          Length = 271

 Score =  300 bits (769), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/198 (76%), Positives = 167/198 (84%), Gaps = 2/198 (1%)

Query: 1   GISSSRKLLAGSSEETPVHSPLTPALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKKL 60
           GISSSR+LLA  S+ TPV SPLTPAL  L+ G T++Q+ V+KPS VQAVLKGIKQSPKK+
Sbjct: 69  GISSSRQLLA-DSDVTPVASPLTPALA-LNGGKTEDQKVVSKPSKVQAVLKGIKQSPKKV 126

Query: 61  NLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVG 120
           NLVA LVRGMRVEDALLQLQLT+KRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVG
Sbjct: 127 NLVAELVRGMRVEDALLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVG 186

Query: 121 KGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQLV 180
           KGFFKKR SYHAKG+ GIKVRPECRL            AK+A+LRV NFRKLSKRE++LV
Sbjct: 187 KGFFKKRVSYHAKGKCGIKVRPECRLTVVVREMTPEEEAKLAKLRVSNFRKLSKREKRLV 246

Query: 181 PHKLIETTPIWNRKGKAA 198
           PH+LIETT IWNRK    
Sbjct: 247 PHQLIETTSIWNRKANGG 264