Jatropha Genome Database

JcCA0308831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308831.20 + phase: 0 
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015060001 assembled CDS                                       133   2e-32
GSVIVT01015058001 assembled CDS                                       124   8e-30
GSVIVT01015059001 assembled CDS                                       119   3e-28
GSVIVT01003827001 assembled CDS                                        48   1e-06
GSVIVT01003820001 assembled CDS                                        47   2e-06
GSVIVT01003821001 assembled CDS                                        47   2e-06
GSVIVT01003831001 assembled CDS                                        46   5e-06
GSVIVT01003830001 assembled CDS                                        45   9e-06

>GSVIVT01015060001 assembled CDS
          Length = 368

 Score =  133 bits (334), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/95 (61%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 28  PISPDLLELPP---ATSLPTNKRLQEVIRLGEGTLEGPEDVCVDRDGVLYTASRDGWIKR 84
           PISPD L LPP   A +LPTN +LQEV ++GEG L  PED+C D +G+LYTA+RDGWIKR
Sbjct: 37  PISPDPLHLPPVSAAINLPTNNKLQEVTKIGEGFLNKPEDLCFDEEGILYTATRDGWIKR 96

Query: 85  LHSNGTWDNWKKIDSNGLLGITISKEGGLIVCDAE 119
           LH NG+W++WK I    LLGIT ++ GG+ VCDA+
Sbjct: 97  LHRNGSWEDWKLIGGYALLGITTARAGGIFVCDAQ 131


>GSVIVT01015058001 assembled CDS
          Length = 382

 Score =  124 bits (312), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 75/94 (79%), Gaps = 2/94 (2%)

Query: 28  PISPDLLELPPATS--LPTNKRLQEVIRLGEGTLEGPEDVCVDRDGVLYTASRDGWIKRL 85
           PISPDLL+LP  +S  L TNK+LQEV ++GEG L+ PEDVC D +G+LYTA+RDGWIKRL
Sbjct: 54  PISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRL 113

Query: 86  HSNGTWDNWKKIDSNGLLGITISKEGGLIVCDAE 119
           H NG+W++W+ I    L+G+T ++ GG+IVCD E
Sbjct: 114 HRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIE 147


>GSVIVT01015059001 assembled CDS
          Length = 461

 Score =  119 bits (298), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 28  PISPDLLELPPATS---LPTNKRLQEVIRLGEGTLEGPEDVCVDRDGVLYTASRDGWIKR 84
           PISPD L LP  ++    PT+ +LQEV ++GEG L+ PEDVC D +G+LYTA+RDGWIKR
Sbjct: 130 PISPDPLHLPHVSATLNYPTSNKLQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKR 189

Query: 85  LHSNGTWDNWKKIDSNGLLGITISKEGGLIVCDAE 119
           LH NG+W++W+ I  + LLG+T ++ GG++VCD +
Sbjct: 190 LHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQ 224


>GSVIVT01003827001 assembled CDS
          Length = 196

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 45  NKRLQEVIRLGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRLHSN-GTWDNWKKIDSNGL 102
           ++ LQ    +G G L GPED+    D  ++YT   DGW+KR+  N     NW        
Sbjct: 64  SRMLQGSEMIGVGKLLGPEDIAYHPDSHLIYTGCADGWVKRVTLNDSVVQNW-AFTGGRP 122

Query: 103 LGITISKEGGLIVCDAE 119
           LG+ + + G LIV DAE
Sbjct: 123 LGVALGRHGQLIVADAE 139


>GSVIVT01003820001 assembled CDS
          Length = 820

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 46  KRLQEVIRLGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRL-----HSNGTWDNWKKIDS 99
           + LQ    +G+G L GPED+  D +  ++YT   DGW+KR+      +N    NW     
Sbjct: 65  RMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNW-AFTG 123

Query: 100 NGLLGITISKEGGLIVCDAE 119
              LG+ + + G ++V DAE
Sbjct: 124 GRPLGVALGRAGEVLVADAE 143


>GSVIVT01003821001 assembled CDS
          Length = 354

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 46  KRLQEVIRLGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRL-----HSNGTWDNWKKIDS 99
           + LQ    +G+G L GPED+  D +  ++YT   DGW+KR+      +N    NW     
Sbjct: 156 RMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNW-AFTG 214

Query: 100 NGLLGITISKEGGLIVCDAE 119
              LG+ + + G ++V DAE
Sbjct: 215 GRPLGVALGRVGEVLVADAE 234


>GSVIVT01003831001 assembled CDS
          Length = 323

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 45  NKRLQEVIRLGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRLHSN-GTWDNWKKIDSNGL 102
           ++ LQ     G G L GPED+    D  ++YT   DGW+KR+  N     NW        
Sbjct: 91  SRMLQGSEMTGVGKLLGPEDIAYHPDSHLIYTGCADGWVKRVTLNDSVVQNW-AFTGGRP 149

Query: 103 LGITISKEGGLIVCDAE 119
           LG+ + + G LIV DAE
Sbjct: 150 LGVALGRHGQLIVADAE 166


>GSVIVT01003830001 assembled CDS
          Length = 457

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 46  KRLQEVIRLGEGTLEGPEDVCVDRDG-VLYTASRDGWIKRLHSNGTW-DNWKKIDSNGLL 103
           + LQ    +G G L  PED+    D  ++YT   DGW+KR+  N +   NW        L
Sbjct: 143 RMLQGSEMIGVGKLLSPEDIAYHPDSHLIYTGCDDGWVKRITLNDSMVQNW-AFTGGRPL 201

Query: 104 GITISKEGGLIVCDAE 119
           G+ + + G L+V DAE
Sbjct: 202 GVALGRHGQLVVADAE 217