Jatropha Genome Database

JcCA0308831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308831.10 - phase: 0 
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016733001 assembled CDS                                       151   1e-37
GSVIVT01035488001 assembled CDS                                       137   1e-33
GSVIVT01017998001 assembled CDS                                        90   3e-19
GSVIVT01017006001 assembled CDS                                        87   3e-18
GSVIVT01017007001 assembled CDS                                        80   4e-16
GSVIVT01017009001 assembled CDS                                        73   4e-14
GSVIVT01035609001 assembled CDS                                        70   4e-13

>GSVIVT01016733001 assembled CDS
          Length = 202

 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 101/142 (71%), Gaps = 6/142 (4%)

Query: 13  TTKPNTQLEVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEAVKDEVL---RSD 69
           +TK  +Q+EVE  KC  CG TEECTP YI  VRER+NGRW+CGLC EAVK+E++   R  
Sbjct: 62  STKIISQIEVEFAKCDCCGLTEECTPEYIETVRERYNGRWICGLCSEAVKEEMIQMKRFQ 121

Query: 70  RLISTEEALNRHINFCNKFK-SSIPLHQTEHPIFVMSRILRRSLDSPRALRSNSSSVLPD 128
           RLISTEEA+++H+NFC  F+ SS P + T H I  M ++LRRSLDSPRALRS  +S  P 
Sbjct: 122 RLISTEEAVDQHMNFCKNFRSSSPPSNPTFHLISAMRQLLRRSLDSPRALRSTPNS--PV 179

Query: 129 VDVEKIKGSALVRSESCFSALS 150
              ++I   AL RSESCF  LS
Sbjct: 180 RQSQEIPRPALTRSESCFPTLS 201


>GSVIVT01035488001 assembled CDS
          Length = 260

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 1/121 (0%)

Query: 2   AISAAETQSNPTTKPNTQLEVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEAV 61
           A+S  E +   T+    + EVE  KC  CG TEECT  YI RVRER+ GRW+CGLC EA+
Sbjct: 9   AVSGIEIEMQSTSSAKHR-EVEFAKCDCCGLTEECTIEYIERVRERYQGRWICGLCAEAI 67

Query: 62  KDEVLRSDRLISTEEALNRHINFCNKFKSSIPLHQTEHPIFVMSRILRRSLDSPRALRSN 121
           KDE++RS RLIS EEALNRH+NF  +F+SS P + TE  I  + ++L R+LDSPR+LR  
Sbjct: 68  KDEIVRSKRLISAEEALNRHMNFFKRFRSSNPPNHTESLISAVKQLLLRTLDSPRSLRKG 127

Query: 122 S 122
            
Sbjct: 128 G 128


>GSVIVT01017998001 assembled CDS
          Length = 120

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 20  LEVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEAVKDEVLRSDRLISTEEALN 79
           +E+E VKC  CG  E+CT  YIS V+ +F+G+WLCGLC EAV+DEV R  +    E+A+ 
Sbjct: 1   MEIELVKCECCGLKEDCTQEYISEVKAKFDGKWLCGLCSEAVRDEVNRGKKPYCLEDAVI 60

Query: 80  RHINFCNKFKSSIPLHQTEHPIFVMSRILRR 110
            H++FC KFKS+  +   +     M ++LRR
Sbjct: 61  AHMSFCRKFKSNPAVRVADG----MRQMLRR 87


>GSVIVT01017006001 assembled CDS
          Length = 155

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 10/95 (10%)

Query: 21  EVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEAVKDEVLRSDRLISTEEALNR 80
           EVE  KC  CG +EECTP YI RVR++F G+W+CGLC EAVK+E+ ++      EEAL+ 
Sbjct: 56  EVEDAKCECCGMSEECTPEYIKRVRDKFLGKWICGLCTEAVKEEIEKNGG--KKEEALST 113

Query: 81  HINFC---NKFKSSIP-LHQTEHPIFVMSRILRRS 111
           H+N C   NK   + P L Q E     M  IL++S
Sbjct: 114 HMNACSRFNKLGRAYPVLFQAE----AMREILKKS 144


>GSVIVT01017007001 assembled CDS
          Length = 190

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 12/129 (9%)

Query: 1   MAISAAETQSNPTTKPNTQLEVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEA 60
           M I   +T+S  T       +VE  +C  CGF EECT +YI +V +  +G+W+CG+C EA
Sbjct: 63  MTIEEGDTRSEAT-------QVEQSRCECCGFMEECTASYIQQVSDSHSGKWVCGICSEA 115

Query: 61  VKDEVLRSDRLISTEEALNRHINFCNKFKSSIPLHQTEHPIFVMSRILRRSLDSPRALRS 120
           VK+ + R  R  + EEAL+ H + C +F ++  L+        M  + RRS       R+
Sbjct: 116 VKERIKRVPR-TAMEEALSSHKDLCERFNTTTRLNPKLSLTMTMRELARRSAHQ----RN 170

Query: 121 NSSSVLPDV 129
           + SS+ P +
Sbjct: 171 DHSSMKPRI 179


>GSVIVT01017009001 assembled CDS
          Length = 160

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 1   MAISAAETQSNPTTKPNTQLEVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEA 60
           M I   +T+S  T       +VE  +C  CGF EECT +YI  V    +G+W+CG+C EA
Sbjct: 34  MTIEEGDTRSEAT-------QVEQSRCECCGFMEECTASYIQLVSYSHSGKWVCGICSEA 86

Query: 61  VKDEVLRSDRLISTEEALNRHINFCNKFKSSIPLHQTEHPIFVMSRILRRSLDSPRALRS 120
           VK+ + R  R  + EEAL+ H + C +F ++  L+        M  + RRS       R+
Sbjct: 87  VKERIKRVPR-TAMEEALSSHKDLCERFNTT-RLNPKLSLTMTMRELARRSAHQ----RN 140

Query: 121 NSSSVLPDV 129
           + SS+ P +
Sbjct: 141 DHSSMKPRI 149


>GSVIVT01035609001 assembled CDS
          Length = 199

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 16/135 (11%)

Query: 21  EVESVKCYSCGFTEECTPAYISRVRERFNGRWLCGLCVEAVKDEVLRSDRLISTEEALNR 80
           EVE+ KC  C   EECTP YIS++R++F+G+ +CGLC EAVK+E+ +    I  EEA+N 
Sbjct: 51  EVENAKCECCDMCEECTPEYISQIRDKFSGKLICGLCAEAVKEEMEKKGWKI--EEAVNE 108

Query: 81  HINFC---NKFKSSIP-LHQTEHPIFVMSRILRRSLDSPRALRSNSSSVLPDVDVEKIKG 136
           H++ C   N+F  + P L+Q E     M  +L+RS  S     S + S+ P     + K 
Sbjct: 109 HMSACVRFNRFGRTHPVLYQAE----AMREMLKRS-SSMEGRASRAKSMSP-----REKK 158

Query: 137 SALVRSESCFSALSR 151
             + RS SC  A++R
Sbjct: 159 GGIARSSSCIPAITR 173