Jatropha Genome Database

JcCA0308681.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308681.30 + phase: 2 /partial
         (340 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009125001 assembled CDS                                       558   e-159

>GSVIVT01009125001 assembled CDS
          Length = 523

 Score =  558 bits (1438), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/308 (86%), Positives = 284/308 (92%)

Query: 33  MQSIQNPESISYLRQREAAEIDEMLMGPLGFSVDQLMELAGLSVATSIEEVYKPSEYNRV 92
           +QS  N +SISYL QREAAEIDE LMGPLGFSVDQLMELAGLSVATSI EVY+PSEYNRV
Sbjct: 57  LQSFHNQDSISYLLQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEVYRPSEYNRV 116

Query: 93  LAICGPGNNGGDGLVAARHLHHFGYKPVICYPKRTAKQLYTGLVTQLESLSVPFLAVEDL 152
           LAICGPGNNGGDGLVAARHLHHFGYKP ICYPKRT K LYTGLVTQLESLSVPFL+VEDL
Sbjct: 117 LAICGPGNNGGDGLVAARHLHHFGYKPYICYPKRTPKPLYTGLVTQLESLSVPFLSVEDL 176

Query: 153 PLDLSKDFDILVDAMFGFSFHGAPRPPFDDLIQKLVYLHKCNEVHEKRSVVVSIDIPSGW 212
           PLDLS DFDILVDAMFGFSFHGAPRPPFDDLI++++ LH   +  +K  V+VSIDIPSGW
Sbjct: 177 PLDLSNDFDILVDAMFGFSFHGAPRPPFDDLIRRMICLHNYGQTRQKPPVIVSIDIPSGW 236

Query: 213 HVEEGDVGGEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFIPPIIVEKFKLHLPPYPGT 272
           HVEEGD+ GEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRF+PP I +KFKLHLPPYPGT
Sbjct: 237 HVEEGDIDGEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPFIADKFKLHLPPYPGT 296

Query: 273 SMCVRIGKPPQIDMSALRENYISPEFLEEQVEANPIDQFRKWFDDAVVAGLKEPNAMCLS 332
           +MCVRIGKPPQID+SALRENYISPEFLEE VEA+P+DQFRKWFDDAVVAGLKEPNAM LS
Sbjct: 297 AMCVRIGKPPQIDISALRENYISPEFLEEYVEADPMDQFRKWFDDAVVAGLKEPNAMALS 356

Query: 333 TVGKDGKP 340
           T GKDGKP
Sbjct: 357 TAGKDGKP 364