Jatropha Genome Database

JcCA0308681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308681.20 + phase: 0 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009124001 assembled CDS                                       240   2e-64
GSVIVT01025834001 assembled CDS                                       153   4e-38
GSVIVT01003617001 assembled CDS                                        99   6e-22
GSVIVT01003616001 assembled CDS                                        89   1e-18
GSVIVT01015432001 assembled CDS                                        82   9e-17
GSVIVT01031261001 assembled CDS                                        49   1e-06

>GSVIVT01009124001 assembled CDS
          Length = 226

 Score =  240 bits (612), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 129/147 (87%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFL 60
           EFTEYTNFDECLAYIED+MI HGPFDGLLGFSQGAILSA L GLQAKG+AL  VPKI FL
Sbjct: 76  EFTEYTNFDECLAYIEDYMIKHGPFDGLLGFSQGAILSAALPGLQAKGLALTKVPKINFL 135

Query: 61  IIIGGAKFKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHPKGHT 120
           IIIGGAK KSPS+AEKAY+S IQC SIHFLGETDFL+ +G+ELLESFV+P+VIHHPKGHT
Sbjct: 136 IIIGGAKLKSPSLAEKAYSSTIQCQSIHFLGETDFLRQYGIELLESFVDPLVIHHPKGHT 195

Query: 121 IPRLDETSQETMLSFIKKIENTLPHSD 147
           +PRLDE S + ML F+++I+  LP  +
Sbjct: 196 VPRLDEKSLQIMLGFLERIQKMLPEKE 222


>GSVIVT01025834001 assembled CDS
          Length = 261

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 97/139 (69%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFL 60
           EFTEYTN +EC+AY+ +++   GPFDGLLGFSQGA LSA L G QA+G  LK  P +K  
Sbjct: 65  EFTEYTNLEECIAYLCEYITTKGPFDGLLGFSQGATLSALLLGYQAQGKVLKEHPPMKLF 124

Query: 61  IIIGGAKFKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHPKGHT 120
           + I G+KF+ PS+ + AY  PI+  S+HF+G  D+L+    +L  +F  P++I HP+GHT
Sbjct: 125 VSISGSKFRDPSICDVAYKDPIKVRSVHFIGAKDWLRLPSEDLATAFDNPLIIRHPQGHT 184

Query: 121 IPRLDETSQETMLSFIKKI 139
           +PRLDE + E + S+  +I
Sbjct: 185 VPRLDEAATEQLRSWTTEI 203


>GSVIVT01003617001 assembled CDS
          Length = 82

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 54/66 (81%)

Query: 76  KAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHPKGHTIPRLDETSQETMLSF 135
            A++ PI C S+HF+GETD LK  G  LLESFV+PVVIHHP+GHT+PRLDE +QET+L F
Sbjct: 11  NAFSPPIPCPSLHFIGETDVLKQEGTALLESFVDPVVIHHPQGHTVPRLDEKAQETVLQF 70

Query: 136 IKKIEN 141
           I+KI N
Sbjct: 71  IRKIWN 76


>GSVIVT01003616001 assembled CDS
          Length = 151

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 46/51 (90%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVAL 51
           +FTEY NF+ECLAYIED+M+ HGPF GLLGFSQGAIL+A L G+QA+GVAL
Sbjct: 73  DFTEYINFEECLAYIEDYMLKHGPFHGLLGFSQGAILAAALPGMQAQGVAL 123


>GSVIVT01015432001 assembled CDS
          Length = 172

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query: 57  IKFLIIIGGAKFKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHP 116
           +K  I I G+KF+ PS+ + AY  PI+  S+HF+G  D+L+    +L  +F  P++I HP
Sbjct: 20  MKLFISISGSKFRDPSICDVAYKDPIKVRSVHFIGAKDWLRLPSEDLATAFDNPLIIRHP 79

Query: 117 KGHTIPRLDETSQETMLS 134
           +GHTIPRLDE + E + S
Sbjct: 80  QGHTIPRLDEAATEQLRS 97


>GSVIVT01031261001 assembled CDS
          Length = 613

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%)

Query: 8   FDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFLIIIGGAK 67
           FD  LAY++      GPFDG++GFSQGA ++A ++  + +     +    +F+I+  G  
Sbjct: 482 FDVSLAYLKTVFSQAGPFDGIMGFSQGAAMAAAVSARRGRPGGEMD---FRFVILCSGFA 538

Query: 68  FKSPSVAEKAYASPIQCASIHFLG-----ETDFLKPHGLELLESFVE--PVVIHHPKGHT 120
              P     +    I C S+H  G     +         +L  SF E   V+I H  GH 
Sbjct: 539 LNLPD----SVGGSINCPSLHIFGNEQGNDRQIANQASRDLAASFEEGCSVIIEHDSGHM 594

Query: 121 IP 122
           IP
Sbjct: 595 IP 596