Jatropha Genome Database

JcCA0308501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308501.20 + phase: 0 /pseudo/partial
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026324001 assembled CDS                                       190   6e-49

>GSVIVT01026324001 assembled CDS
          Length = 407

 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/153 (64%), Positives = 109/153 (71%), Gaps = 9/153 (5%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDECGQELGELLLNLSRAWELADTSTSRDLAS 139
           PSDYF QLPRDLRLDLNDAAFDLS+GPVIDECGQELGE LLNLSRAWE ADTS+S  L S
Sbjct: 184 PSDYFAQLPRDLRLDLNDAAFDLSSGPVIDECGQELGETLLNLSRAWEQADTSSSSTLVS 243

Query: 140 KLPMLE---------TFGKRLVSAGRRFQSMGQYGQGEMQKVAQAMIRTGKLLSANPIXX 190
           KLP LE          FGKRLVSAGRRFQSMGQYGQGE+Q++A+AM  TGKLL A+ +  
Sbjct: 244 KLPSLEGSLTDNAKTAFGKRLVSAGRRFQSMGQYGQGELQRIAKAMTMTGKLLCASSVSA 303

Query: 191 XXXXXXXXXXRVFKFWRTSGCSHSXESYIGAAI 223
                     R+ KF        S ++ IGAAI
Sbjct: 304 ETNVQPKEETRMLKFGELQVALTSDKANIGAAI 336