Jatropha Genome Database

JcCA0308501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308501.10 - phase: 0 
         (327 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035914001 assembled CDS                                       617   e-177
GSVIVT01015367001 assembled CDS                                       381   e-106
GSVIVT01035662001 assembled CDS                                       370   e-103
GSVIVT01020739001 assembled CDS                                       322   1e-88
GSVIVT01030218001 assembled CDS                                       316   8e-87
GSVIVT01017971001 assembled CDS                                        60   2e-09

>GSVIVT01035914001 assembled CDS
          Length = 462

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/309 (94%), Positives = 301/309 (97%)

Query: 19  QVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVAWSEYRYYDPK 78
           +VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV WSEYRYYDPK
Sbjct: 154 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK 213

Query: 79  TVGLDFEGMISDIKAAPEGSFILLHGCAHNPTGIDPTPEQWEMIADVIQEKNHIPFFDVA 138
           TVGLDF+GMISDIKAAPEGSF+LLHGCAHNPTGIDPTPEQWE IADVIQEKNHIPFFDVA
Sbjct: 214 TVGLDFDGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 273

Query: 139 YQGFASGSLDADAASVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK 198
           YQGFASGSLDADA+SVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK
Sbjct: 274 YQGFASGSLDADASSVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK 333

Query: 199 SQLKRLARPMYSNPPVHGARIVANVVGDPTLFNEWKAEMEMMAGRIKGVRQKLFDSLSAK 258
           SQLKR+ARPMYSNPP+HGARIVANVVGDP LFNEWK EME+MAGRIK VRQKLFDSLSAK
Sbjct: 334 SQLKRIARPMYSNPPIHGARIVANVVGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAK 393

Query: 259 DKSGKDWSFILKQIGMFSFTGLSKTQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 318
           DK GKDWSFILKQIGMFSFTGLSK QSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA
Sbjct: 394 DKCGKDWSFILKQIGMFSFTGLSKVQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 453

Query: 319 IIDSYHNVS 327
           IIDS+H VS
Sbjct: 454 IIDSFHCVS 462


>GSVIVT01015367001 assembled CDS
          Length = 411

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/301 (58%), Positives = 226/301 (75%), Gaps = 1/301 (0%)

Query: 19  QVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVAWSEYRYYDPK 78
           +VATVQGLSGTGSLR+ A  + R++    + I  PTWGNH  IF  A ++   YRYYDP+
Sbjct: 104 RVATVQGLSGTGSLRIGAEFLARHYYQHTIYIPVPTWGNHPKIFTIAGLSVKTYRYYDPE 163

Query: 79  TVGLDFEGMISDIKAAPEGSFILLHGCAHNPTGIDPTPEQWEMIADVIQEKNHIPFFDVA 138
           T GLDF+G++ D+ AAP G+ +LLH CAHNPTG+DPT EQWE I  +++ K  +PFFD A
Sbjct: 164 TRGLDFKGLLEDLGAAPTGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSA 223

Query: 139 YQGFASGSLDADAASVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK 198
           YQGFASGSLDADA SVR+F A G E L AQSY+KN+GLY ER+GA+++VC +AD A+RV+
Sbjct: 224 YQGFASGSLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKAADVASRVE 283

Query: 199 SQLKRLARPMYSNPPVHGARIVANVVGDPTLFNEWKAEMEMMAGRIKGVRQKLFDSLSAK 258
           SQLK + RPMYSNPP+HGA IVA ++ D  ++NEW  E++ MA RI  +RQ LFD+L  +
Sbjct: 284 SQLKLVIRPMYSNPPIHGASIVATILKDSDMYNEWTLELKAMADRIISMRQLLFDTLRDR 343

Query: 259 DKSGKDWSFILKQIGMFSFTGLSKTQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 318
              G DWS I+KQIGMF+FTGL+  Q   MT ++H+YMT DGRIS+AGLS     +LADA
Sbjct: 344 GTPG-DWSHIIKQIGMFTFTGLNTEQVAFMTKEYHIYMTSDGRISMAGLSSRTVPHLADA 402

Query: 319 I 319
           I
Sbjct: 403 I 403


>GSVIVT01035662001 assembled CDS
          Length = 422

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/301 (57%), Positives = 223/301 (74%), Gaps = 1/301 (0%)

Query: 19  QVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVAWSEYRYYDPK 78
           +V TVQ LSGTGSLR+ A  + R+     + I  PTWGNH  IF  A ++   YRYYDP 
Sbjct: 115 RVTTVQCLSGTGSLRVGAEFLARHHHQRTIYIPQPTWGNHGKIFTLAGLSVKTYRYYDPA 174

Query: 79  TVGLDFEGMISDIKAAPEGSFILLHGCAHNPTGIDPTPEQWEMIADVIQEKNHIPFFDVA 138
           T GL+F+G++ D+  AP G+ +LLH CAHNPTG+DPT +QWE I  +I+ K  +PFFD A
Sbjct: 175 TRGLNFQGLLEDLSLAPSGAIVLLHACAHNPTGVDPTLQQWEQIRQLIRLKGLLPFFDSA 234

Query: 139 YQGFASGSLDADAASVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK 198
           YQGFASGSLDADA SVR+F A G E L AQSY+KN+GLY ER+GA+++VC +AD A+RV+
Sbjct: 235 YQGFASGSLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKTADVASRVE 294

Query: 199 SQLKRLARPMYSNPPVHGARIVANVVGDPTLFNEWKAEMEMMAGRIKGVRQKLFDSLSAK 258
           SQ+K + RPM+SNPP+HGA IVA ++ +  ++NEW  E++ MA RI  +RQ+LFD+L A+
Sbjct: 295 SQVKLVIRPMFSNPPIHGASIVAIILKNRDMYNEWTVELKAMADRIISMRQQLFDALRAR 354

Query: 259 DKSGKDWSFILKQIGMFSFTGLSKTQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 318
              G DW+ ILKQIGMF+FTGL+  Q   MT ++HVYMT DGRIS+AGLS     +LADA
Sbjct: 355 GTPG-DWNHILKQIGMFTFTGLNTAQVAFMTKEYHVYMTSDGRISMAGLSSKTVPHLADA 413

Query: 319 I 319
           I
Sbjct: 414 I 414


>GSVIVT01020739001 assembled CDS
          Length = 423

 Score =  322 bits (826), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/309 (49%), Positives = 212/309 (68%), Gaps = 5/309 (1%)

Query: 19  QVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVAWSEYRYYDPK 78
           ++A VQ LSGTG+ RL A   +R+ P +++ I  PTW NH NI+ DA+V    + YY P+
Sbjct: 117 RIAAVQALSGTGACRLFADFQKRFRPDSQIYIPVPTWANHHNIWRDAQVPQRTFHYYHPE 176

Query: 79  TVGLDFEGMISDIKAAPEGSFILLHGCAHNPTGIDPTPEQWEMIADVIQEKNHIPFFDVA 138
           T GLDF  ++ D+K AP GSF LLH CAHNPTG+DP+ EQW+ I+   + K H  FFD+A
Sbjct: 177 TKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPSEEQWKEISYQFKVKGHFAFFDMA 236

Query: 139 YQGFASGSLDADAASVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK 198
           YQGFASG  + DA S+++F   G  + +AQSY+KN+GLY +R+G ++++C     A  VK
Sbjct: 237 YQGFASGDPERDAKSIKIFLEDGHLIGIAQSYAKNMGLYGQRVGCLSLLCEDEKQAVAVK 296

Query: 199 SQLKRLARPMYSNPPVHGARIVANVVGDPTLFNEWKAEMEMMAGRIKGVRQKLFDSLSAK 258
           SQL+++ARPMYSNPPV GA IV+ ++GDP L   W  E+++MA RI G+R  L ++L  K
Sbjct: 297 SQLQQIARPMYSNPPVQGALIVSTILGDPELKKLWLKEVKVMADRIIGMRTALRENLE-K 355

Query: 259 DKSGKDWSFILKQIGMFSFTGLSKTQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 318
             S   W  I  QIGMF ++GL+  Q + MTN++H+YMT++GRIS+AG++     YLA+A
Sbjct: 356 LGSPLSWEHITNQIGMFCYSGLTPEQVDRMTNEFHIYMTRNGRISMAGITTGNVSYLANA 415

Query: 319 IIDSYHNVS 327
           I    H VS
Sbjct: 416 I----HEVS 420


>GSVIVT01030218001 assembled CDS
          Length = 427

 Score =  316 bits (810), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 145/301 (48%), Positives = 203/301 (67%), Gaps = 1/301 (0%)

Query: 19  QVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVAWSEYRYYDPK 78
           + A VQ LSGTG+ RL A    R++P +++ +  PTW NH NI+ DA+V    + YY P 
Sbjct: 121 RFAGVQALSGTGACRLFAEFQRRFYPQSRIYLPIPTWSNHHNIWRDAQVPGRTFHYYHPD 180

Query: 79  TVGLDFEGMISDIKAAPEGSFILLHGCAHNPTGIDPTPEQWEMIADVIQEKNHIPFFDVA 138
           + GL F  ++ DIK AP+ SF LLH CAHNPTG+DPT EQW  I+++ + KNH PFFD+A
Sbjct: 181 SKGLHFAALMDDIKNAPDRSFFLLHPCAHNPTGVDPTEEQWREISNLFKVKNHFPFFDMA 240

Query: 139 YQGFASGSLDADAASVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVK 198
           YQGFASG LD DA ++R+F   G  +  AQS++KN+GLY  R+G ++V+C  A  A  +K
Sbjct: 241 YQGFASGDLDKDAKAIRIFLEDGHLIGCAQSFAKNMGLYGHRVGCLSVLCVDAKQAVAIK 300

Query: 199 SQLKRLARPMYSNPPVHGARIVANVVGDPTLFNEWKAEMEMMAGRIKGVRQKLFDSLSAK 258
           SQL+ + R MYS+PPVHG  +V+ ++ DP L   WK E+++MA RI  +R  L +SL  K
Sbjct: 301 SQLQHITRAMYSSPPVHGILLVSTILSDPHLKELWKKELKVMANRIHRMRSTLHESLK-K 359

Query: 259 DKSGKDWSFILKQIGMFSFTGLSKTQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 318
             S  +W  +  Q+GMF F+GLS  Q   +  ++H+YMT DGRIS+AG++ +   YLA+A
Sbjct: 360 LGSPLNWDHMTNQVGMFCFSGLSPDQVNRLVKEFHIYMTYDGRISMAGVTTSNVSYLANA 419

Query: 319 I 319
           I
Sbjct: 420 I 420


>GSVIVT01017971001 assembled CDS
          Length = 110

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 89  SDIKAAPEGSFILLHGCAHNPTGIDPTPEQWEMIADVIQEKNHIPFFDVAYQGFASGSLD 148
           SD+  AP G+ +LL  CAHNPTG+DPT EQWE I  ++  K  +        G    + D
Sbjct: 37  SDLSVAPAGAIVLLRTCAHNPTGVDPTLEQWEQIIQLMSLKGMVRRLVYGLMGVTISTFD 96

Query: 149 A 149
            
Sbjct: 97  V 97