Jatropha Genome Database

JcCA0308421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308421.20 + phase: 0 /partial
         (210 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014998001 assembled CDS                                       331   2e-91

>GSVIVT01014998001 assembled CDS
          Length = 1052

 Score =  331 bits (848), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/210 (75%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 1   QLQDLTRKGCPLVGIADITCDVGGSIEFINETTSIDCPFFRYEPLNDSYHHDMDGNGLIC 60
           QLQDL RKGCPL+GI+DITCD+GGS+EF+N+TTSID PFFRY+P NDSYHHDM+G G+IC
Sbjct: 323 QLQDLMRKGCPLLGISDITCDIGGSLEFVNQTTSIDSPFFRYDPFNDSYHHDMEGKGVIC 382

Query: 61  SSVDILPTEFAKEASQHFGDILSQFIGSLVSTTDITKLPSHLRRACIAHGGAPTPMFEYI 120
           +SVDILPTEFAKEAS+HFGDILS+FIGSL STTDIT+LP+HLRRACIAHGGA T +FEYI
Sbjct: 383 ASVDILPTEFAKEASKHFGDILSEFIGSLASTTDITELPAHLRRACIAHGGAVTTLFEYI 442

Query: 121 PRMRNSESEDMRENPVXXXXXXXXXXXXXXXXGHLFDQFLINEALDIIEAAGGSFHLVKC 180
           PRMRNS+SE + E  +                GHLFDQFLINEALDIIEAAGGSFHLVKC
Sbjct: 443 PRMRNSDSEKLPET-LANCHSNKKYNILVSLSGHLFDQFLINEALDIIEAAGGSFHLVKC 501

Query: 181 HVGQSANTPSYSELEVGADDREVLDQIIDS 210
            VGQSAN  SYSELEVGADD  VL QIIDS
Sbjct: 502 QVGQSANAMSYSELEVGADDNAVLHQIIDS 531