Jatropha Genome Database

JcCA0308351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308351.20 - phase: 0 /pseudo/partial
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027627001 assembled CDS                                       293   3e-80

>GSVIVT01027627001 assembled CDS
          Length = 365

 Score =  293 bits (751), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 140/176 (79%), Positives = 166/176 (94%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PT+IYNVPSRTGQDIPPGVIH+ AQS NLAGVKEC+GNDR++QYT+  IVVWSGNDD+CH
Sbjct: 190 PTVIYNVPSRTGQDIPPGVIHTVAQSANLAGVKECVGNDRIKQYTDNRIVVWSGNDDQCH 249

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           DA+W +GATGVISV SNL+PGLMR+L+ +GK+P+LN+K++PL+ WLF+EPNPIGLNTALA
Sbjct: 250 DAKWDYGATGVISVTSNLIPGLMRQLLFKGKNPSLNAKIMPLVNWLFEEPNPIGLNTALA 309

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGVVRPVFRLPYVPLPL KR+EFVN+VK IGRENFVGE+DV+VL+DDDF+LVGRY
Sbjct: 310 QLGVVRPVFRLPYVPLPLAKRVEFVNIVKEIGRENFVGEKDVKVLDDDDFILVGRY 365