Jatropha Genome Database

JcCA0308281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308281.10 - phase: 0 /partial
         (57 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023476001 assembled CDS                                        83   3e-17

>GSVIVT01023476001 assembled CDS
          Length = 75

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 45/52 (86%)

Query: 1  MDPRYTGEMLKHLEKQNELLTEAYNSMSHELHKLQVEEEMLMRKFYELMAAQ 52
          MDP+YT E+L+HLEKQN+LL +AY SMSHELHKLQVEEEMLM KFYE   A+
Sbjct: 1  MDPKYTAEILEHLEKQNDLLMDAYRSMSHELHKLQVEEEMLMHKFYEFTKAE 52