Jatropha Genome Database

JcCA0308171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308171.30 - phase: 0 /pseudo/partial
         (195 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009365001 assembled CDS                                       123   6e-29
GSVIVT01037863001 assembled CDS                                        55   2e-08

>GSVIVT01009365001 assembled CDS
          Length = 882

 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 87/150 (58%), Gaps = 5/150 (3%)

Query: 51  AKSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSA 110
            KS+K N++EDDK                   LSKWQLMAEQARQ+REGG +A S SQ  
Sbjct: 733 VKSLKANKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGIDAASGSQPG 792

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXN---LGKNQ--VMQISVARTISVKDV 165
           KD      STSGRN ++NQE EK                G+N   V Q  VAR I+VKDV
Sbjct: 793 KDASRKLSSTSGRNARENQEAEKRGYSTVVSSPGGVRKFGRNNAIVPQTRVARNITVKDV 852

Query: 166 IAVLEREPQMSKSNLICRLHERTGSGAQTK 195
           I+VLEREPQM KS LI RL+E+  SGA T+
Sbjct: 853 ISVLEREPQMLKSTLIYRLYEKMRSGAATE 882


>GSVIVT01037863001 assembled CDS
          Length = 82

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 120 TSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVM--QISVARTISVKDVIAVLEREPQMSK 177
           TSGR + D+QE               +G+NQ    Q  V R++S+KD++A LEREPQM+K
Sbjct: 5   TSGRRVGDSQELHAKGISADVGTKSRVGENQSARPQSKVVRSVSIKDLLATLEREPQMAK 64

Query: 178 SNLICRLHER 187
           S L  RL ER
Sbjct: 65  SALTQRLRER 74