Jatropha Genome Database

JcCA0308071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308071.10 - phase: 2 /pseudo/partial
         (304 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010305001 assembled CDS                                        96   3e-20
GSVIVT01007532001 assembled CDS                                        90   1e-18
GSVIVT01029824001 assembled CDS                                        50   1e-06

>GSVIVT01010305001 assembled CDS
          Length = 347

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 2/80 (2%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEGESS+HV+DLGM+LG PQGQQWR+L+H LAN  +  PP  L+ITGVG + E L+ I
Sbjct: 107 EAFEGESSVHVVDLGMNLGSPQGQQWRSLMHSLANR-AGKPPSSLQITGVGTAAECLKDI 165

Query: 281 GNELECYARCMGFNNLEFYM 300
            +ELE YA  +G  N +F M
Sbjct: 166 IDELEVYAESLGM-NFQFSM 184


>GSVIVT01007532001 assembled CDS
          Length = 491

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 74/148 (50%), Gaps = 1/148 (0%)

Query: 147 LFLGRHFKELLLALFKGYLIGLCLFNHLGLSEFQLLQQKQLLVSHQRRMKPCAFSMKFCH 206
           L  G  F+ +     +G    L L   LG   F       L  + +++ +      + C 
Sbjct: 178 LVFGSSFQRVASCFVQGLADRLSLVQPLGAVGFIAPSINPLDTAWEKKEEALRLVYEICP 237

Query: 207 KSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLR 266
                  +      + FEGE+  HV+DLGM+LGL  GQQWR LIH LAN  +  PP+RLR
Sbjct: 238 HIKFGHFVANASILEAFEGENFAHVVDLGMTLGLAHGQQWRQLIHSLANR-AGRPPRRLR 296

Query: 267 ITGVGNSGERLEAIGNELECYARCMGFN 294
           ITGVG   +R + IG ELE YA+ +  N
Sbjct: 297 ITGVGLCVDRFKIIGEELEAYAQDLDIN 324


>GSVIVT01029824001 assembled CDS
          Length = 664

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 223 FEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAIGN 282
           FE E  +H+IDL +     QG QW  L H LA+      P  +R+TG+G S E LEA G 
Sbjct: 393 FEREERVHIIDLDIM----QGLQWPGLFHILASRPGG--PPFVRLTGLGTSMEALEATGK 446

Query: 283 ELECYARCMGFNNLEFY 299
            L  +A  +G    EF+
Sbjct: 447 RLTDFAEKLGL-PFEFF 462