Jatropha Genome Database

JcCA0307901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307901.20 + phase: 0 
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016740001 assembled CDS                                       212   9e-56
GSVIVT01014223001 assembled CDS                                       141   2e-34
GSVIVT01035101001 assembled CDS                                       122   1e-28
GSVIVT01028387001 assembled CDS                                       100   3e-22
GSVIVT01014547001 assembled CDS                                        83   8e-17
GSVIVT01027872001 assembled CDS                                        80   9e-16
GSVIVT01023346001 assembled CDS                                        67   7e-12
GSVIVT01011252001 assembled CDS                                        50   8e-07

>GSVIVT01016740001 assembled CDS
          Length = 212

 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 130/188 (69%), Gaps = 6/188 (3%)

Query: 1   MLHSIIRKPNTLTTVLCRRXXXXXXXXXX------XXXXXXXXXXXXXVANNSPVTPRTE 54
           M+ S+IR P  LT VL                                  ++   T  +E
Sbjct: 1   MIRSLIRNPLQLTAVLSLSAAASNVRLSRCYFPLIPTSSFVSSRSAFGYFSSDSETQSSE 60

Query: 55  LTRLPSILEDCDYKHWLVVMEAPKEYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTK 114
           LTRLP+IL+ CDY+HWLVVMEAP+ YPLRDEI+  Y++TLAM L SEE+AK+SIYSVSTK
Sbjct: 61  LTRLPTILDGCDYEHWLVVMEAPQRYPLRDEIVRGYIRTLAMVLRSEEEAKKSIYSVSTK 120

Query: 115 YYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVPYDDKYHEDW 174
           YYYAFGC ++ENL ++IKSLP+VKWVLPDSYLC G + YGGEPF +GEVVPYD+KYH DW
Sbjct: 121 YYYAFGCKIAENLAHQIKSLPNVKWVLPDSYLCHGGNGYGGEPFVNGEVVPYDEKYHADW 180

Query: 175 VRNQINEK 182
           +R++ ++K
Sbjct: 181 LRDKSDDK 188


>GSVIVT01014223001 assembled CDS
          Length = 229

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 78/102 (76%)

Query: 74  MEAPKEYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFGCNVSENLTYKIKS 133
           ME P+  P RDEII+ Y+KTLAM +GSEE+A+  IYSVST+ Y+AFG  VSE L+ KIK 
Sbjct: 1   MEKPEGDPTRDEIIDSYIKTLAMIVGSEEEARMKIYSVSTRCYFAFGALVSEELSLKIKE 60

Query: 134 LPDVKWVLPDSYLCCGESSYGGEPFFDGEVVPYDDKYHEDWV 175
           LP V+WVLPDSYL      YGGEPF DG+ VPYD KYHE+W+
Sbjct: 61  LPRVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWI 102


>GSVIVT01035101001 assembled CDS
          Length = 260

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 61  ILEDCDYKHWLVVMEAPKEY-PLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAF 119
           +L+ CDY+HWL+VME P +  P  DE+I  YVKTLA  +GSEE+AK+ IYSV T  Y  F
Sbjct: 85  LLDGCDYEHWLIVMEFPNDSKPSEDEMIAAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGF 144

Query: 120 GCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVV 164
           G  +SE L+YK+K LP V WVLPDSYL      YGG+ F DG+V+
Sbjct: 145 GALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFIDGKVI 189


>GSVIVT01028387001 assembled CDS
          Length = 145

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)

Query: 58  LPSILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYY 116
           +  +   CDY+HWL+VM+ P  E   + ++I+ Y++TLA  +GSEE+AK+ IY+VS + Y
Sbjct: 1   MAPLFPGCDYEHWLIVMDKPGGEGATKHQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERY 60

Query: 117 YAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVV 164
           + FGC + E  + K++ LP V +VLPDSY+      YG E F +GE+V
Sbjct: 61  FGFGCEIDEETSNKLEDLPGVLFVLPDSYVDPENKDYGAELFVNGEIV 108


>GSVIVT01014547001 assembled CDS
          Length = 127

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 53/80 (66%)

Query: 86  IINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSY 145
           +I+ Y+ TLA  LGS E+AK+++Y+ ST  Y  F C VSE  + K K LP V WVLPDSY
Sbjct: 1   MIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 60

Query: 146 LCCGESSYGGEPFFDGEVVP 165
           +      YGG+ + +GE++P
Sbjct: 61  IDVKNKDYGGDKYINGEIIP 80


>GSVIVT01027872001 assembled CDS
          Length = 116

 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 55/79 (69%)

Query: 86  IINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSY 145
           +I+ Y++TLA  +GSEE+AK+ IY+VS + Y+ FGC + E  + K++ LP V +VLPDSY
Sbjct: 1   MIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSY 60

Query: 146 LCCGESSYGGEPFFDGEVV 164
           +      YG E F +GE+V
Sbjct: 61  VDPEYKDYGAELFVNGEIV 79


>GSVIVT01023346001 assembled CDS
          Length = 258

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 74  MEAPKE-YPLRDEIINRYVKTLAMALG-SEEKAKESIYSVSTKYYYAFGCNVSENLTYKI 131
           M+ PK+  P  +E++  YV+TLA  L  S E+AK  +Y+ ST  Y  F   ++E  + K 
Sbjct: 1   MDFPKDPKPTPEEMVETYVQTLAKGLNISVEEAKLKMYACSTTTYTGFQAVMTEEESEKF 60

Query: 132 KSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
           + LP V ++LPDSY+      YGG+ + +G ++P
Sbjct: 61  RGLPGVVFILPDSYINPATKEYGGDKYINGTIIP 94


>GSVIVT01011252001 assembled CDS
          Length = 315

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 59  PSILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYY 117
           P +    + K+WLV M+ P      + ++++ Y + L   LG+E+ A+  IY +S +  +
Sbjct: 102 PQLFPAGNSKYWLVQMDRPTVGVVTKAQMVDFYAQILTKVLGNEKDAQMCIYHISWQSDF 161

Query: 118 AFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGG 155
            F C + E    ++  +P V  V PD         YGG
Sbjct: 162 GFCCELDEECARELAGVPGVLSVRPDENFESNNKDYGG 199