Jatropha Genome Database

JcCA0307801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307801.10 + phase: 0 
         (510 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025735001 assembled CDS                                       667   0.0  
GSVIVT01036287001 assembled CDS                                        74   2e-13
GSVIVT01036288001 assembled CDS                                        60   2e-09

>GSVIVT01025735001 assembled CDS
          Length = 404

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/404 (82%), Positives = 349/404 (86%)

Query: 107 MRLRNWLFHNFREVSRLYGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 166
           MRLRNWLF++FREVSR +GFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR
Sbjct: 1   MRLRNWLFNHFREVSRSFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 60

Query: 167 PELTPSLARLVIQKGKSVPLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPEVTAE 226
           PELTPSLARLVIQKGKSV LPLKWFAVGQCW           EHYQWNMDIIGVPEV AE
Sbjct: 61  PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPEVMAE 120

Query: 227 AELISSIVTFFKRIGITASDVGFKVSSRKVLQEVLKCYSISENLFGKVCXXXXXXXXXXX 286
           AELISSIVTFFKR+GITASDVGFKVSSRKVLQEVL+CYSI ENLFGKVC           
Sbjct: 121 AELISSIVTFFKRVGITASDVGFKVSSRKVLQEVLRCYSIPENLFGKVCVIIDKMEKIPI 180

Query: 287 XXXXXXLKSVGMSEEAVEELLQVLSIKSLTKLEEILGGAGEAVADLKQLFSLAENFGYSE 346
                 LKS+GMSEEA+++LLQVLSIKSLTKLEEILG AGEAVADLKQLFSLAE FGYSE
Sbjct: 181 DEITKELKSLGMSEEAIKDLLQVLSIKSLTKLEEILGAAGEAVADLKQLFSLAEKFGYSE 240

Query: 347 WIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDDLPACGFGFGDA 406
           WIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDD+PACGFGFGDA
Sbjct: 241 WIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDDVPACGFGFGDA 300

Query: 407 VIVXXXXXXXXXXXXXXQVENIVCALDPDLQGAASTVATILREKGQTVDLVLENKPLKWV 466
           VI+              QVENIVCALD  LQGAA+ VAT LREKGQ+VDLVLE+KPLKWV
Sbjct: 301 VIIELLKEKGLLPELSLQVENIVCALDHYLQGAAAAVATRLREKGQSVDLVLESKPLKWV 360

Query: 467 FKRAGRINAQRLILVGNTEWQKGMVGVKILSSGEQYEVKLDELE 510
           FKRA R NAQRLILVGN+EWQ+GMV VKILSSGEQYE+KLDELE
Sbjct: 361 FKRAARTNAQRLILVGNSEWQRGMVSVKILSSGEQYEIKLDELE 404


>GSVIVT01036287001 assembled CDS
          Length = 318

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 18/277 (6%)

Query: 241 GITASDVGFKVSSRKVLQEVLKCYSISENLFGKVCXXXXXXXXXXXXXXXXXL-KSVGMS 299
            +T+++   K++ RK+L  +L    +    F  +C                 + +  G++
Sbjct: 24  ALTSNNFVVKLNHRKLLDGMLDICGVPPEKFRTICSSIDKLDKQTFEQIKREMVEEKGLT 83

Query: 300 EEAVEELLQVLS-----IKSLTKLE----EILGGAGE--AVADLKQLFSLAENFGYSEWI 348
            E  E++   +      ++ L+KL+    E LG      A+ DL+ LF+  E       +
Sbjct: 84  IETAEKIGTFVKERGPPLELLSKLKQEGSEFLGNNASVAALTDLEILFTALEKSKCINKV 143

Query: 349 QFDASVVRGLAYYTGIVFEG-FDREGKLRAICGGGRYDRLLSTFGGDDLPACGFGFG-DA 406
            FD S+ RGL YYTG++FE  F    ++ +I  GGRYD L+  FG   +PA G   G + 
Sbjct: 144 VFDLSLARGLDYYTGVIFEAVFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGTSLGIER 203

Query: 407 V--IVXXXXXXXXXXXXXXQVENIVCALDPDLQGAASTVATILREKGQTVDLVLENKPLK 464
           V  I+              + + +V     DL  AA  V+ +   K +  + ++  +P K
Sbjct: 204 VFNIMEQLQKDQNQAIRATETQVLVSIFGNDLSQAAELVSELWNAKLK-AEYMVNKRPTK 262

Query: 465 WVFKRAGRINAQRLILVGNTEWQKGMVGVKILSSGEQ 501
             F RA       +ILVG  E  +G+V ++  ++ E+
Sbjct: 263 H-FDRAEESRIPWMILVGEREQNEGIVRLRDTTTREE 298


>GSVIVT01036288001 assembled CDS
          Length = 574

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 96  PKGTRDFPPEEMRLRNWLFHNFREVSRLYGFEEVDFPVLESEALFIRKAGEEIRDQLYCF 155
           PKGTRDF  E+M +R   F    +V + +G   +D PV E     + K GE+ +  +Y  
Sbjct: 414 PKGTRDFAKEQMAVREKAFSIIGDVFKRHGAMALDTPVFELRETLMGKYGEDSK-LIYDL 472

Query: 156 EDRGNRRVALRPELTPSLARLVIQKGKSVPLPLKWFAVGQCWXXXXXXXXXXXEHYQWNM 215
            D+G    +LR +LT   AR V   G +     K + + + +           E YQ + 
Sbjct: 473 ADQGGELCSLRYDLTVPFARYVAMNGLT---SFKRYQIAKVYRRDNPSKGRYREFYQCDF 529

Query: 216 DIIG 219
           DI G
Sbjct: 530 DIAG 533