Jatropha Genome Database

JcCA0307751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307751.10 + phase: 0 /TE/partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036343001 assembled CDS                                        55   2e-08

>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 9   EVDPRLR--SQLDATVLQWIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALY 66
           EV+P      + D  +L WIY +++ D++  I+    T+  AW  L+  F  +  +R + 
Sbjct: 173 EVNPDFLVWRRYDRMILSWIYSSLTPDVMGQIVGLQ-TSHEAWTALQRSFSASTKARTMQ 231

Query: 67  LENQFSHVLLDDFPNISAYCQELKMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGVATI 126
           L   F          +  Y Q+LK +SD L+ +G PV  +  +LQL++GL   Y+ +   
Sbjct: 232 LRLAFQTNKKGSL-TMMEYIQKLKHISDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIAS 290

Query: 127 IQQSD 131
           +   D
Sbjct: 291 LTTRD 295